Non-Coding RNA Search

Ss1.1-rtes10_p23.5

Sequence:


               
               TTCAGTGAAAAACAACCTTGGAGAAAACGCCAGGAAGAAGATCTGAGAGTGAAAAGTGCC
AGTAAGAAAGACATTATTTACTTATTTACAGGTTTACCTCGGTCAACATAAGAAACCCAA
TACGGCTTGGCCTTGGAGAATGCTGTATTAAATGCAGTAAAAGCTGGATTTCATTCGTAC
GGACCCCAGAACCAGCTACCTTTCTTCTTCACCTAGAGAGACGACACACCCTGAGTTCTG
GCTCTCCCGACCGAGACCACTCTGTGCAGAGCAATCTGAGCACCATTTTCTTTTCTGGCA
ATGAGGTAAAGACAGGTGGTTTTGCAAGAGGAAAAACCACACCGCATCTCTGTTACACAG
TCCTATTCTGGCCTGGCCTTCGAGGCTTTCACACTCCCTTCCGAAGCACCAGTTGTTGTT
ATTGAGATTTATCTTACCTGAGTCTGTTCTTCTTGTGAACACATCTCACTTTTGTGTCTG
TCTTCCTTTTGTGTCTTTCCTGTATTTATGGAGAGTGTGCAAGCGTGTCTGTTATTCCTG
ACTGGTGCTACTGTATCTGCCAAGGGAGAGAAGACCTGTTCAGAAGGGGGTTCTGAAGAC
TGACCATCCACATCTTGCAGGAGAAACTGCTGGACAGGACTTTGGCAGTGGCTACTTTCT
GAGTTCCTAAGACATTTACCGCCGGACTAGCACTTCTGTCATGAGCCCTTATCCCTTTCA
GCCCATCCCTCTAAAATGCCTGTGCCTTTTGGGGCTCTGTGCTAGTTTCAGGCGCAGGAG
TTTGCTTTGCTTTTAACTTTTTTTTCCAATTCTGTAAGGCTTTTCCCTTTTTATCCGTGT
TGATTGTTTGAGACCAAATTCAGTATGAACAAGAGAGGGAAATATACAACTTTGAACTTG
GAGGAGAAAATGAAGGTTCTAAGTAGGATTGAAGCTGGGCGATCTCTTAAAAGTGTCATG
GATGAATTTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGTGAAAAACAACCTTGGAGAAAACGCCAGGAAGAAGATCTGAGAGTGAAAAGTGCC
AGTAAGAAAGACATTATTTACTTATTTACAGGTTTACCTCGGTCAACATAAGAAACCCAA
TACGGCTTGGCCTTGGAGAATGCTGTATTAAATGCAGTAAAAGCTGGATTTCATTCGTAC
GGACCCCAGAACCAGCTACCTTTCTTCTTCACCTAGAGAGACGACACACCCTGAGTTCTG
GCTCTCCCGACCGAGACCACTCTGTGCAGAGCAATCTGAGCACCATTTTCTTTTCTGGCA
ATGAGGTAAAGACAGGTGGTTTTGCAAGAGGAAAAACCACACCGCATCTCTGTTACACAG
TCCTATTCTGGCCTGGCCTTCGAGGCTTTCACACTCCCTTCCGAAGCACCAGTTGTTGTT
ATTGAGATTTATCTTACCTGAGTCTGTTCTTCTTGTGAACACATCTCACTTTTGTGTCTG
TCTTCCTTTTGTGTCTTTCCTGTATTTATGGAGAGTGTGCAAGCGTGTCTGTTATTCCTG
ACTGGTGCTACTGTATCTGCCAAGGGAGAGAAGACCTGTTCAGAAGGGGGTTCTGAAGAC
TGACCATCCACATCTTGCAGGAGAAACTGCTGGACAGGACTTTGGCAGTGGCTACTTTCT
GAGTTCCTAAGACATTTACCGCCGGACTAGCACTTCTGTCATGAGCCCTTATCCCTTTCA
GCCCATCCCTCTAAAATGCCTGTGCCTTTTGGGGCTCTGTGCTAGTTTCAGGCGCAGGAG
TTTGCTTTGCTTTTAACTTTTTTTTCCAATTCTGTAAGGCTTTTCCCTTTTTATCCGTGT
TGATTGTTTGAGACCAAATTCAGTATGAACAAGAGAGGGAAATATACAACTTTGAACTTG
GAGGAGAAAATGAAGGTTCTAAGTAGGATTGAAGCTGGGCGATCTCTTAAAAGTGTCATG
GATGAATTTGGA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               27-251, gnl|bosTau2|chr25 (334601-334379)
               

               
               27-251, gnl|Hg17|chr16 (3291505-3291278)
               

               
               27-251, gnl|Mm7|chrX (90011124-90010925)
               


               
               396-972, gnl|bosTau2|chr25 (334202-333613)
               

               
               396-972, gnl|Hg17|chr16 (3291090-3290508)
               

               
               396-972, gnl|Mm7|chrX (90010744-90010181)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-251, gnl|bosTau2|chr25 (334601-334379)
               

               
               27-251, gnl|Hg17|chr16 (3291505-3291278)
               

               
               27-251, gnl|Mm7|chrX (90011124-90010925)
               


               
               396-972, gnl|bosTau2|chr25 (334202-333613)
               

               
               396-972, gnl|Hg17|chr16 (3291090-3290508)
               

               
               396-972, gnl|Mm7|chrX (90010744-90010181)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               med (0.232504)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               tes (0.207814)

	27-251, gnl\|bosTau2\|chr25 (334601-334379)
	27-251, gnl\|Hg17\|chr16 (3291505-3291278)
	27-251, gnl\|Mm7\|chrX (90011124-90010925)

	396-972, gnl\|bosTau2\|chr25 (334202-333613)
	396-972, gnl\|Hg17\|chr16 (3291090-3290508)
	396-972, gnl\|Mm7\|chrX (90010744-90010181)