Non-Coding RNA Search

Ss1.1-rtes12_m17.5

Sequence:


               
               CCAGGTGGTGGCAAGTGCTTTGACTCCCATGATCTTGGGGTCTGAATTTACAAAGCATGT
GCTTTTAGAGTCTCTCCGAGGCAAAGATGGAGCTGAGAAGAAAAGATCAATCTCTGCGTC
AGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGTCGACTGGAGGAGAACATCC
ATGATGCAGAGAGTGCCCTCCGCATGGCAGCCAAAGACAAAGAATATGTTGCTAACCATA
TGAGAACAGTAGAAAATATGCTTCATAAGGTCAGAGATCAGATCTCGCTGTCACGGACTG
CGGCAAGTAGGAATGACTTCACCCTGCAGCTACCCAGACTGCACCTGGAGACCTTTGCAA
TGGAGGGGCTCAAGGGCGGGCCAGAGGTTGTAGCGTGCCAGGCTATGATTAAAAGTTTCA
TGGATGTCTACCAACTTGCAAGCACTAGAATTGCTACGTTAGAAAAGGAAATGACATCTC
ATCGAAGTCACATTGCAACCTTGAAATCAGAACTTCACACAGCTTGTTTACGTGAAAATG
AAAGTTTACCATCAACAGGATCACGAGACCATTCAAATCTCTCCATTCCTTCAAGAGCTG
CTCTTCCTGCTGACACAATTGATGTTGGAGATTTTTTGCCTTTGAAAGCTGAACTTGATA
CAACTTACACTTTCTTAAAGGAGACACTTATAAATCCCATGCCCCTGACATCATCTCACT
CCTCTCCAGTGACTCTGTCTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGTGGTGGCAAGTGCTTTGACTCCCATGATCTTGGGGTCTGAATTTACAAAGCATGT
GCTTTTAGAGTCTCTCCGAGGCAAAGATGGAGCTGAGAAGAAAAGATCAATCTCTGCGTC
AGCTCAATAGACATCTTACCCAGCTGGAGCAGGACAAGCGTCGACTGGAGGAGAACATCC
ATGATGCAGAGAGTGCCCTCCGCATGGCAGCCAAAGACAAAGAATATGTTGCTAACCATA
TGAGAACAGTAGAAAATATGCTTCATAAGGTCAGAGATCAGATCTCGCTGTCACGGACTG
CGGCAAGTAGGAATGACTTCACCCTGCAGCTACCCAGACTGCACCTGGAGACCTTTGCAA
TGGAGGGGCTCAAGGGCGGGCCAGAGGTTGTAGCGTGCCAGGCTATGATTAAAAGTTTCA
TGGATGTCTACCAACTTGCAAGCACTAGAATTGCTACGTTAGAAAAGGAAATGACATCTC
ATCGAAGTCACATTGCAACCTTGAAATCAGAACTTCACACAGCTTGTTTACGTGAAAATG
AAAGTTTACCATCAACAGGATCACGAGACCATTCAAATCTCTCCATTCCTTCAAGAGCTG
CTCTTCCTGCTGACACAATTGATGTTGGAGATTTTTTGCCTTTGAAAGCTGAACTTGATA
CAACTTACACTTTCTTAAAGGAGACACTTATAAATCCCATGCCCCTGACATCATCTCACT
CCTCTCCAGTGACTCTGTCTGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|20378341|gb|AAM20913.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|20378341|gb|AAM20913.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               268-431, gnl|bosTau2|chr8 (14606168-14606330)
               

               
               268-431, gnl|Hg17|chr9 (15864528-15864690)
               

               
               268-431, gnl|Mm7|chr4 (83198924-83199086)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               268-431, gnl|bosTau2|chr8 (14606168-14606330)
               

               
               268-431, gnl|Hg17|chr9 (15864528-15864690)
               

               
               268-431, gnl|Mm7|chr4 (83198924-83199086)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (1.03907)
               

               
               cte (0.29274)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)
               

               
               cte (0.29274)

	268-431, gnl\|bosTau2\|chr8 (14606168-14606330)
	268-431, gnl\|Hg17\|chr9 (15864528-15864690)
	268-431, gnl\|Mm7\|chr4 (83198924-83199086)