Non-Coding RNA Search

Ss1.1-rtes12_m21.5

Sequence:


               
               ATTTTCTCCTCCTCCATGGCACCCGTCGTGGTTGAACTCCTCGGGGGTGCAGTAGAAAGC
ATAGGAGTCCGTGTGAGGTTGGCCGGAGGCCGCGGGCCCAGCATTGAGCACACCGCATCC
GCCTGGCTGGGTCGAACCCCTTGAGAAGGAATCCTGTGTGGTCTTTCCAAGCGTAAACCA
GAAACACTTTTGGGCCCAACATTTGCAGTCGCCTTCCTGATGTAAAGAAACTAACAGATG
CTAGAATCCAGTGTCAGGAAGACAAATATGTTTGCTTCTCTGAAGAAGCTTTTAATCATA
TACAGTATATGTATATCTAGGGAACAACTGGTCAAAAGCGGCTTTTTGTTTCCCCAAGGG
GAAAGACTGGCTTTGTAATTATACTTGGTTTCCTTATTTATTTTCCTTAAAACTGGTAGA
GTCCAAGTGTTGTATGAAGTGCCCATGATTCTGCCAGTGACTTGGAGCATATTTTTATTA
GTTTTCGTCGGTTTAACTAATCCTTTTGTTTGTTCCTATTTTTAAGGTGAATTTTAAACT
ATTCTAAATCGTAAGTTACCTTAAGACCCATTGCAGTGAGAGGAGGTAGATACTCTTTTT
TTTCAGGAGGAACTGATATCTCGGCTACACATTCGTCCTCGTTGTAAAGTCAGTCATCTG
ATTCAGCTTTACTTTCAGGAAAATAAAGGACTGTCAGAATCTCGGTGTGGTTGTGGCAGG
ATGGACGAGAGCGCGGGCAGTGGTGGCGTGCGGGTCCGAGAATCCCTGAGCGCTCGGCGT
CGGGTCGGGGCCGCGTCTGCGAAGTCCCCGTCCCCGTCCCCGTCCCTGTCCTAGCAGTTC
CGTCGCTTCCGGGGGTCGGTCATCCCGCAGGAAGTGATCCCTCCCGGCCCAGCGCCCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCTCCTCCTCCATGGCACCCGTCGTGGTTGAACTCCTCGGGGGTGCAGTAGAAAGC
ATAGGAGTCCGTGTGAGGTTGGCCGGAGGCCGCGGGCCCAGCATTGAGCACACCGCATCC
GCCTGGCTGGGTCGAACCCCTTGAGAAGGAATCCTGTGTGGTCTTTCCAAGCGTAAACCA
GAAACACTTTTGGGCCCAACATTTGCAGTCGCCTTCCTGATGTAAAGAAACTAACAGATG
CTAGAATCCAGTGTCAGGAAGACAAATATGTTTGCTTCTCTGAAGAAGCTTTTAATCATA
TACAGTATATGTATATCTAGGGAACAACTGGTCAAAAGCGGCTTTTTGTTTCCCCAAGGG
GAAAGACTGGCTTTGTAATTATACTTGGTTTCCTTATTTATTTTCCTTAAAACTGGTAGA
GTCCAAGTGTTGTATGAAGTGCCCATGATTCTGCCAGTGACTTGGAGCATATTTTTATTA
GTTTTCGTCGGTTTAACTAATCCTTTTGTTTGTTCCTATTTTTAAGGTGAATTTTAAACT
ATTCTAAATCGTAAGTTACCTTAAGACCCATTGCAGTGAGAGGAGGTAGATACTCTTTTT
TTTCAGGAGGAACTGATATCTCGGCTACACATTCGTCCTCGTTGTAAAGTCAGTCATCTG
ATTCAGCTTTACTTTCAGGAAAATAAAGGACTGTCAGAATCTCGGTGTGGTTGTGGCAGG
ATGGACGAGAGCGCGGGCAGTGGTGGCGTGCGGGTCCGAGAATCCCTGAGCGCTCGGCGT
CGGGTCGGGGCCGCGTCTGCGAAGTCCCCGTCCCCGTCCCCGTCCCTGTCCTAGCAGTTC
CGTCGCTTCCGGGGGTCGGTCATCCCGCAGGAAGTGATCCCTCCCGGCCCAGCGCCCGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               194-470, + strand, RNAz p=0.98552

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-470, + strand, RNAz p=0.98552

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_182488, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_182488, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-799, gnl|bosTau2|chr12 (18318385-18319190)
               

               
               1-799, gnl|Hg17|chr13 (26541133-26540331)
               

               
               1-799, gnl|Mm7|chr5 (145631795-145631075)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-799, gnl|bosTau2|chr12 (18318385-18319190)
               

               
               1-799, gnl|Hg17|chr13 (26541133-26540331)
               

               
               1-799, gnl|Mm7|chr5 (145631795-145631075)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.623441)
               

               
               cst (0.140036)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               cst (0.140036)
               

               
               ste (0.135208)

	1-799, gnl\|bosTau2\|chr12 (18318385-18319190)
	1-799, gnl\|Hg17\|chr13 (26541133-26540331)
	1-799, gnl\|Mm7\|chr5 (145631795-145631075)