Non-Coding RNA Search

Ss1.1-rtes12_n17.5

Sequence:


               
               GCTGGGATTATGCGCCATCCGTCCCCTCCAGTAACATGTGCTTAAGAGAAGGTCACTTAT
TTTAAATCTGTCAAAAGAAAAGAAAGAAAAGAGAACACTTGATTTCCAGATTGAGTTTGT
CTATAAATCTCATACTCATACCAACTCCTTTGGAACACAGAGCTGGACTTCAGGAGAAAG
TGATGTGAAAAGGAAAGACCAAGTAAGCCTCCTGGCGAATACCTTACAATCTTAAATGAC
ATTCATTTTACTTAAACATTCTTTATAGGAAAAGGATTTCCAAGTCTTAGCATCATTTGC
ATTTATGATGAAATGCACCGCTGAGAAGATAAGAGGGAGAAAATGAAATTTTGTTTTTGT
TTGAGCATTATCTTTGTAGATATCATTTTACTGCTAAGGAGGAAGATTTAGCAAATACTT
CTCTCTAGCTCTGAAATTTCTTTTCATCAAGATAAGGAGCTAAACAGTAACTTCTTTATA
GAAACTTGTTTTAAAAGACTTTACCATTCTTTGACAGAAAATACTGATTCACACATTATG
GAATAAAAATTGATCATCATGAGCTCAGTTCAGTAAGATGTTTGCAGTGATTACTCTTGA
CACTGTCACAGACTTTAAAGTGCTTAGCAAATATTTCATAAATAAAATGAAGATGATTAC
AATAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGGATTATGCGCCATCCGTCCCCTCCAGTAACATGTGCTTAAGAGAAGGTCACTTAT
TTTAAATCTGTCAAAAGAAAAGAAAGAAAAGAGAACACTTGATTTCCAGATTGAGTTTGT
CTATAAATCTCATACTCATACCAACTCCTTTGGAACACAGAGCTGGACTTCAGGAGAAAG
TGATGTGAAAAGGAAAGACCAAGTAAGCCTCCTGGCGAATACCTTACAATCTTAAATGAC
ATTCATTTTACTTAAACATTCTTTATAGGAAAAGGATTTCCAAGTCTTAGCATCATTTGC
ATTTATGATGAAATGCACCGCTGAGAAGATAAGAGGGAGAAAATGAAATTTTGTTTTTGT
TTGAGCATTATCTTTGTAGATATCATTTTACTGCTAAGGAGGAAGATTTAGCAAATACTT
CTCTCTAGCTCTGAAATTTCTTTTCATCAAGATAAGGAGCTAAACAGTAACTTCTTTATA
GAAACTTGTTTTAAAAGACTTTACCATTCTTTGACAGAAAATACTGATTCACACATTATG
GAATAAAAATTGATCATCATGAGCTCAGTTCAGTAAGATGTTTGCAGTGATTACTCTTGA
CACTGTCACAGACTTTAAAGTGCTTAGCAAATATTTCATAAATAAAATGAAGATGATTAC
AATAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-349, - strand, RNAz p=0.861699

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-349, - strand, RNAz p=0.861699

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-349, gnl|bosTau2|chr20 (17592546-17592881)
               

               
               4-349, gnl|Hg17|chr5 (50252803-50256219)
               

               
               4-349, gnl|Mm7|chr13 (113960628-113960296)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-349, gnl|bosTau2|chr20 (17592546-17592881)
               

               
               4-349, gnl|Hg17|chr5 (50252803-50256219)
               

               
               4-349, gnl|Mm7|chr13 (113960628-113960296)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.623441)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)

	4-349, gnl\|bosTau2\|chr20 (17592546-17592881)
	4-349, gnl\|Hg17\|chr5 (50252803-50256219)
	4-349, gnl\|Mm7\|chr13 (113960628-113960296)