Non-Coding RNA Search

Ss1.1-rtes12_o5.5

Sequence:


               
               AAGCCAAAGCAGATTTGGAAAAAGATGATAAAATAGCTCACAATTTGGAGAAAGTGCTAC
TGAATTTCTGGGAAAGATGTCAGAAATCTGTGTTGAGAAAATCAGTGAGCCAGAAGCCAA
TGTTAAGTCAGTTTTGGGTATTTCTAACCTATTACAGATCCTTCAAAAGCCAAAGAGCTC
CTTGAAGTTAAATAGAAAAAAAGTTGGAAAGGTTAGATTTGCTGATGAGATGCCCGAAAG
TAATAAAGAAAATGAAAAATGTGTCTCCTCAGAAGGAGAGAATAGTGAAGGCTCTGAATT
AATGGCTGAACCTTCTCTAACTCAGAATTGCTCGGACCTCATATCTCCGCTAAGGAAAAA
ACCTTTGGAAGACTTAGTCTGTAAACTAGCAGAGATGAGTATTAATTATGTCAATGAACA
AAAGTCAGAGCAACATCTAAGGTTTCTTTCCACTCTGCTCAACTCCTTTTCTTCAAGCCA
AGTATTTAAAGTGCTACTAGGAGATGAAAAACAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCAAAGCAGATTTGGAAAAAGATGATAAAATAGCTCACAATTTGGAGAAAGTGCTAC
TGAATTTCTGGGAAAGATGTCAGAAATCTGTGTTGAGAAAATCAGTGAGCCAGAAGCCAA
TGTTAAGTCAGTTTTGGGTATTTCTAACCTATTACAGATCCTTCAAAAGCCAAAGAGCTC
CTTGAAGTTAAATAGAAAAAAAGTTGGAAAGGTTAGATTTGCTGATGAGATGCCCGAAAG
TAATAAAGAAAATGAAAAATGTGTCTCCTCAGAAGGAGAGAATAGTGAAGGCTCTGAATT
AATGGCTGAACCTTCTCTAACTCAGAATTGCTCGGACCTCATATCTCCGCTAAGGAAAAA
ACCTTTGGAAGACTTAGTCTGTAAACTAGCAGAGATGAGTATTAATTATGTCAATGAACA
AAAGTCAGAGCAACATCTAAGGTTTCTTTCCACTCTGCTCAACTCCTTTTCTTCAAGCCA
AGTATTTAAAGTGCTACTAGGAGATGAAAAACAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-438, - strand, RNAz p=0.78445

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-438, - strand, RNAz p=0.78445

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-515, gnl|bosTau2|chr1 (6573961-6574476)
               

               
               1-515, gnl|Hg17|chr21 (29261281-29260766)
               

               
               1-515, gnl|Mm7|chr16 (87458217-87457702)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-515, gnl|bosTau2|chr1 (6573961-6574476)
               

               
               1-515, gnl|Hg17|chr21 (29261281-29260766)
               

               
               1-515, gnl|Mm7|chr16 (87458217-87457702)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-515, gnl\|bosTau2\|chr1 (6573961-6574476)
	1-515, gnl\|Hg17\|chr21 (29261281-29260766)
	1-515, gnl\|Mm7\|chr16 (87458217-87457702)