Ss1.1-rtes13_g16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGTACAGATGAAATCAGTTTGCAGCTACTGAAAGTAGGGAGGAACATACAAGTTATT TATTACAAAGAAAAAGAACCAAAGTAAAAGGCTCGGAGAAATGAAGTTAAAAGGAATAGA AGTAGCTCCTGAATAGAAGTGAAAGACCAAAGTGGTTTCACTAAAATGGCTTCACAGCTG CCTTTTCCTGCAGACGACTTCGGTATCTACTATGTCCTCTCAGAGTGCACAGATCACTAT GACCCCTTTCCAGTGAACGAGGCTGATGAGAACCAGCCACATTTCCAGGGTGTGACTGGC CTGCGGAACTTGGGCAATACCTGCTACATGAATGCCATCTTACAGTGTCTCTGCAGCATC TCGCCGCTGGTGGAATATTTTCTCTCCGGAAAGTACATTACTGCCCTTCAAAAGGATTGT AGTGAGGTTGCCACGGCTTTCGCCTATGTGATGACAGACATGTGGCTTGGAGACTCTGAA TGTGTCTCACCAGAAATATTTCGGTCAGCTCTTGGCAACCTCTACCCAGCGTTAATGAAA AAGACGCAGCAAGATGCTCAGGAATTCTTGATTTATGTCCTGAATGAACTTCATGAAGCT CTGAAAAAGTACCACCGAAGAAGATCATATGAAAATAGATCTATTCCAAGATGCTGCAAG AAAATGATTGCCAGTGAGTCCTCTATCATCACCCGGCTGTTTGAAGGGCAGCTCAGTTAC AGCATTATATGTTTAAAGTGTGAAAACTGCACCTATAAGAACGAGGTCTTCACTGTTCTG CCCCTTCCCATTCCATCGGAATACGAGTGCTCTCTTCAGGACTGTCTCCAGTGTTTTTTT CAACAAGACACACTGACTTGGAACAACCAGATTCACTGTTCCTTTTGTGAAACCAAGCAA GAAACAGCTGTGAGGGCCAGTATTTCTAAAGCCCCCAAAATAATTGTCTTTCACTTAAAG AGGTTTGACATTCTGGGTACAATGAAAAGGAAACTGAGGACAGATATTCATTACCCACTC ACTAACTTGGACCTTACTCCTTACATTTGTCCAATTTTTCGGAAACATCCTAAATATAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGTACAGATGAAATCAGTTTGCAGCTACTGAAAGTAGGGAGGAACATACAAGTTATT TATTACAAAGAAAAAGAACCAAAGTAAAAGGCTCGGAGAAATGAAGTTAAAAGGAATAGA AGTAGCTCCTGAATAGAAGTGAAAGACCAAAGTGGTTTCACTAAAATGGCTTCACAGCTG CCTTTTCCTGCAGACGACTTCGGTATCTACTATGTCCTCTCAGAGTGCACAGATCACTAT GACCCCTTTCCAGTGAACGAGGCTGATGAGAACCAGCCACATTTCCAGGGTGTGACTGGC CTGCGGAACTTGGGCAATACCTGCTACATGAATGCCATCTTACAGTGTCTCTGCAGCATC TCGCCGCTGGTGGAATATTTTCTCTCCGGAAAGTACATTACTGCCCTTCAAAAGGATTGT AGTGAGGTTGCCACGGCTTTCGCCTATGTGATGACAGACATGTGGCTTGGAGACTCTGAA TGTGTCTCACCAGAAATATTTCGGTCAGCTCTTGGCAACCTCTACCCAGCGTTAATGAAA AAGACGCAGCAAGATGCTCAGGAATTCTTGATTTATGTCCTGAATGAACTTCATGAAGCT CTGAAAAAGTACCACCGAAGAAGATCATATGAAAATAGATCTATTCCAAGATGCTGCAAG AAAATGATTGCCAGTGAGTCCTCTATCATCACCCGGCTGTTTGAAGGGCAGCTCAGTTAC AGCATTATATGTTTAAAGTGTGAAAACTGCACCTATAAGAACGAGGTCTTCACTGTTCTG CCCCTTCCCATTCCATCGGAATACGAGTGCTCTCTTCAGGACTGTCTCCAGTGTTTTTTT CAACAAGACACACTGACTTGGAACAACCAGATTCACTGTTCCTTTTGTGAAACCAAGCAA GAAACAGCTGTGAGGGCCAGTATTTCTAAAGCCCCCAAAATAATTGTCTTTCACTTAAAG AGGTTTGACATTCTGGGTACAATGAAAAGGAAACTGAGGACAGATATTCATTACCCACTC ACTAACTTGGACCTTACTCCTTACATTTGTCCAATTTTTCGGAAACATCCTAAATATAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 395-540, - strand, RNAz p=0.980914 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 395-540, - strand, RNAz p=0.980914 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-223, gnl|bosTau2|chr3 (16083274-16083495) | |
| 1-223, gnl|Hg17|chr15 (48626172-48625957) | |
| 1-223, gnl|Mm7|chr2 (126524286-126524068) | |
| 395-609, gnl|bosTau2|chr3 (16085745-16085960) | |
| 395-609, gnl|canFam2|chr30 (19443083-19443293) | |
| 395-609, gnl|dasNov1|scaffold_17478 (45633-45423) | |
| 395-609, gnl|echTel1|scaffold_170922 (1317-1108) | |
| 395-609, gnl|fr1|chrUn (240426897-240426705) | |
| 395-609, gnl|galGal2|chr10 (11422289-11422093) | |
| 395-609, gnl|hg17|chr15 (48623069-48623279) | |
| 395-609, gnl|Hg17|chr15 (48623305-48623087) | |
| 395-609, gnl|loxAfr1|scaffold_29079 (71286-71076) | |
| 395-609, gnl|mm7|chr2 (126520769-126520976) | |
| 395-609, gnl|Mm7|chr2 (126521012-126520784) | |
| 395-609, gnl|monDom2|scaffold_12 (17925625-17925414) | |
| 395-609, gnl|oryCun1|scaffold_205791 (13644-13854) | |
| 395-609, gnl|panTro1|chr16 (48644428-48644638) | |
| 395-609, gnl|rheMac2|chr7 (28864357-28864567) | |
| 395-609, gnl|rn3|chr3 (114211744-114211940) | |
| 395-609, gnl|tetNig1|chr5 (9764175-9764352) | |
| 961-1080, gnl|bosTau2|chr3 (16092480-16092599) | |
| 961-1080, gnl|Hg17|chr15 (48609420-48609301) | |
| 961-1080, gnl|Mm7|chr2 (126510858-126510739) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-223, gnl|bosTau2|chr3 (16083274-16083495) | |
| 1-223, gnl|Hg17|chr15 (48626172-48625957) | |
| 1-223, gnl|Mm7|chr2 (126524286-126524068) | |
| 395-609, gnl|bosTau2|chr3 (16085745-16085960) | |
| 395-609, gnl|canFam2|chr30 (19443083-19443293) | |
| 395-609, gnl|dasNov1|scaffold_17478 (45633-45423) | |
| 395-609, gnl|echTel1|scaffold_170922 (1317-1108) | |
| 395-609, gnl|fr1|chrUn (240426897-240426705) | |
| 395-609, gnl|galGal2|chr10 (11422289-11422093) | |
| 395-609, gnl|hg17|chr15 (48623069-48623279) | |
| 395-609, gnl|Hg17|chr15 (48623305-48623087) | |
| 395-609, gnl|loxAfr1|scaffold_29079 (71286-71076) | |
| 395-609, gnl|mm7|chr2 (126520769-126520976) | |
| 395-609, gnl|Mm7|chr2 (126521012-126520784) | |
| 395-609, gnl|monDom2|scaffold_12 (17925625-17925414) | |
| 395-609, gnl|oryCun1|scaffold_205791 (13644-13854) | |
| 395-609, gnl|panTro1|chr16 (48644428-48644638) | |
| 395-609, gnl|rheMac2|chr7 (28864357-28864567) | |
| 395-609, gnl|rn3|chr3 (114211744-114211940) | |
| 395-609, gnl|tetNig1|chr5 (9764175-9764352) | |
| 961-1080, gnl|bosTau2|chr3 (16092480-16092599) | |
| 961-1080, gnl|Hg17|chr15 (48609420-48609301) | |
| 961-1080, gnl|Mm7|chr2 (126510858-126510739) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) |