Non-Coding RNA Search

Ss1.1-rtes14_f11.5

Sequence:


               
               GGAGAGCGAGGGCCACCACCTGCCAGACCCCGAGGCCCCGAGGCAGGAGAGGAGTCGGCG
AGGAAGACGCCCCAACCGCCGCAGTCCGCGGAGGAGGAGGACGAGGCCCAGGCTGCAGTG
CGGCCGAGCCCGGAGCAGCCCTCGCCGGTGGCCAGGGCCCCCGACGCCGTGGGCGAGGGG
TTGTCGCCGCGGAGCCCGCAGCCCGGCAAGGAGCGCCTGCGCTTCCAGTTCTTAGAGCAG
AAATACGGCTACTATCACTGCAAGGACTGCAACATCCGATGGGAAAGTGCCTACGTGTGG
TGTGTCCACGGCACTAACAAGGTTTACTACAAGCAGTTTTGCAGAACCTGTCAGAAGTCT
TATAACCCTTATCGCGTGGAGGATATCACCTGTCAGAATTGTAAACTGACTAGATGCTCC
TGCCCAGTAAAACTTCGCCACGTGGACCCCAAAAGGCCCCACCGTCAAGATTTGTGTGGG
AGATGCAAAGGCAAACGCCTCTCCTGTGACAGCACTTTCAGTTTCAAATATATTATTTAA
GCGAAAAGCAACAAACCATAAACCCTGGTCCTACTGATCAGGTGCTAAGGGAGCAGACAA
GTGAGCCTTTTTCCATGCTCTTCTCCTTTCTCCCTCTCCCTCCTCTAAATACTTCACGAA
AGGCTGTATTTGACAAAGCTGTCAAATAAAAGCATTGCAAAACAAAAAGACGGATGAAGA
CATGGAGACGGAGGCCGTCAATGAGATTCTGGAAGATATTCCAGAACACGAAGAAGACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGCGAGGGCCACCACCTGCCAGACCCCGAGGCCCCGAGGCAGGAGAGGAGTCGGCG
AGGAAGACGCCCCAACCGCCGCAGTCCGCGGAGGAGGAGGACGAGGCCCAGGCTGCAGTG
CGGCCGAGCCCGGAGCAGCCCTCGCCGGTGGCCAGGGCCCCCGACGCCGTGGGCGAGGGG
TTGTCGCCGCGGAGCCCGCAGCCCGGCAAGGAGCGCCTGCGCTTCCAGTTCTTAGAGCAG
AAATACGGCTACTATCACTGCAAGGACTGCAACATCCGATGGGAAAGTGCCTACGTGTGG
TGTGTCCACGGCACTAACAAGGTTTACTACAAGCAGTTTTGCAGAACCTGTCAGAAGTCT
TATAACCCTTATCGCGTGGAGGATATCACCTGTCAGAATTGTAAACTGACTAGATGCTCC
TGCCCAGTAAAACTTCGCCACGTGGACCCCAAAAGGCCCCACCGTCAAGATTTGTGTGGG
AGATGCAAAGGCAAACGCCTCTCCTGTGACAGCACTTTCAGTTTCAAATATATTATTTAA
GCGAAAAGCAACAAACCATAAACCCTGGTCCTACTGATCAGGTGCTAAGGGAGCAGACAA
GTGAGCCTTTTTCCATGCTCTTCTCCTTTCTCCCTCTCCCTCCTCTAAATACTTCACGAA
AGGCTGTATTTGACAAAGCTGTCAAATAAAAGCATTGCAAAACAAAAAGACGGATGAAGA
CATGGAGACGGAGGCCGTCAATGAGATTCTGGAAGATATTCCAGAACACGAAGAAGACTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58416213|emb|CAI47794.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58416213|emb|CAI47794.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               222-395, gnl|bosTau2|chr10 (39076888-39076715)
               

               
               222-395, gnl|Hg17|chr4 (48335706-48335956)
               

               
               222-395, gnl|Mm7|chr5 (71952928-71952678)
               


               
               458-713, gnl|bosTau2|chr5 (56992889-56993162)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               222-395, gnl|bosTau2|chr10 (39076888-39076715)
               

               
               222-395, gnl|Hg17|chr4 (48335706-48335956)
               

               
               222-395, gnl|Mm7|chr5 (71952928-71952678)
               


               
               458-713, gnl|bosTau2|chr5 (56992889-56993162)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cte (0.29274)
               

               
               tes (0.207814)
               

               
               pgl (0.118483)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               pgl (0.118483)

	222-395, gnl\|bosTau2\|chr10 (39076888-39076715)
	222-395, gnl\|Hg17\|chr4 (48335706-48335956)
	222-395, gnl\|Mm7\|chr5 (71952928-71952678)

	458-713, gnl\|bosTau2\|chr5 (56992889-56993162)