Ss1.1-rtes14_f18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTAATTCCTTTACCTTCATCCAAAATTAACAATGTTTTTTTTGGTGAAATTTTAAACTA TTTTAAATTATGCCCAGAGTTACAACAATGCCCTCGAAAAACTCAAACTAAAGAAAGCTC AAAAGGATGAAAGTAAGGAAAGTAAGAAAAGCGAAGATTTGGCTGAACAAGCCAGAAGAG AAGGCTTTGATGAAACTGAGATTCAAAGTGCAGAGAAGATGAAAAAATGGAAGGAGAGGC TTGAGAAAAAGTATTATTCTACAGAAATTCAAGATGATTACCAGCCTGTCACTCAACAAG AATTTCGAGACCTCTTCTTATATGCTGTGGAGCTGGAGAAAGAATTACACTACGTTAGTT TAAAATTAAACCGAGTGATGAGAAAGGTTTCAGCTCTACAATATTGAGACAAGTGGAGGT TACATAAGCCCCCCAAGAAGAGCCATTTGTTCTCAGCTCAAGTGACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTAATTCCTTTACCTTCATCCAAAATTAACAATGTTTTTTTTGGTGAAATTTTAAACTA TTTTAAATTATGCCCAGAGTTACAACAATGCCCTCGAAAAACTCAAACTAAAGAAAGCTC AAAAGGATGAAAGTAAGGAAAGTAAGAAAAGCGAAGATTTGGCTGAACAAGCCAGAAGAG AAGGCTTTGATGAAACTGAGATTCAAAGTGCAGAGAAGATGAAAAAATGGAAGGAGAGGC TTGAGAAAAAGTATTATTCTACAGAAATTCAAGATGATTACCAGCCTGTCACTCAACAAG AATTTCGAGACCTCTTCTTATATGCTGTGGAGCTGGAGAAAGAATTACACTACGTTAGTT TAAAATTAAACCGAGTGATGAGAAAGGTTTCAGCTCTACAATATTGAGACAAGTGGAGGT TACATAAGCCCCCCAAGAAGAGCCATTTGTTCTCAGCTCAAGTGACAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 311-420, - strand, RNAz p=0.981337 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 311-420, - strand, RNAz p=0.981337 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 23-147, gnl|bosTau2|chr7 (34504601-34504726) | |
| 23-147, gnl|Hg17|chr5 (137288574-137288698) | |
| 23-147, gnl|Mm7|chr18 (34808699-34808824) | |
| 198-310, gnl|bosTau2|chr7 (34511272-34511384) | |
| 198-310, gnl|canFam2|chr11 (28638115-28638280) | |
| 198-310, gnl|dasNov1|scaffold_5055 (53122-53275) | |
| 198-310, gnl|hg17|chr5 (137299351-137299504) | |
| 198-310, gnl|Hg17|chr5 (137299385-137299497) | |
| 198-310, gnl|loxAfr1|scaffold_2383 (72377-72549) | |
| 198-310, gnl|mm7|chr18 (34813533-34813686) | |
| 198-310, gnl|Mm7|chr18 (34813567-34813679) | |
| 198-310, gnl|monDom2|scaffold_6 (71651276-71651123) | |
| 198-310, gnl|oryCun1|scaffold_170431 (19336-19488) | |
| 198-310, gnl|panTro1|chr4 (143902968-143903121) | |
| 198-310, gnl|rheMac2|chr6 (134340366-134340519) | |
| 198-310, gnl|rn3|chr18 (26933244-26933409) | |
| 311-420, gnl|bosTau2|chr7 (34511821-34511931) | |
| 311-420, gnl|canFam2|chr11 (28638863-28638960) | |
| 311-420, gnl|dasNov1|scaffold_5055 (53933-54030) | |
| 311-420, gnl|echTel1|scaffold_323979 (98237-98334) | |
| 311-420, gnl|galGal2|chr13 (13177398-13177298) | |
| 311-420, gnl|hg17|chr5 (137299906-137300003) | |
| 311-420, gnl|Hg17|chr5 (137299908-137300017) | |
| 311-420, gnl|loxAfr1|scaffold_2383 (72972-73069) | |
| 311-420, gnl|mm7|chr18 (34814194-34814287) | |
| 311-420, gnl|Mm7|chr18 (34814196-34814299) | |
| 311-420, gnl|monDom2|scaffold_6 (71650347-71650250) | |
| 311-420, gnl|oryCun1|scaffold_170431 (19862-19955) | |
| 311-420, gnl|panTro1|chr4 (143903523-143903620) | |
| 311-420, gnl|rheMac2|chr6 (134340915-134341012) | |
| 311-420, gnl|rn3|chr18 (26934108-26934188) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 23-147, gnl|bosTau2|chr7 (34504601-34504726) | |
| 23-147, gnl|Hg17|chr5 (137288574-137288698) | |
| 23-147, gnl|Mm7|chr18 (34808699-34808824) | |
| 198-310, gnl|bosTau2|chr7 (34511272-34511384) | |
| 198-310, gnl|canFam2|chr11 (28638115-28638280) | |
| 198-310, gnl|dasNov1|scaffold_5055 (53122-53275) | |
| 198-310, gnl|hg17|chr5 (137299351-137299504) | |
| 198-310, gnl|Hg17|chr5 (137299385-137299497) | |
| 198-310, gnl|loxAfr1|scaffold_2383 (72377-72549) | |
| 198-310, gnl|mm7|chr18 (34813533-34813686) | |
| 198-310, gnl|Mm7|chr18 (34813567-34813679) | |
| 198-310, gnl|monDom2|scaffold_6 (71651276-71651123) | |
| 198-310, gnl|oryCun1|scaffold_170431 (19336-19488) | |
| 198-310, gnl|panTro1|chr4 (143902968-143903121) | |
| 198-310, gnl|rheMac2|chr6 (134340366-134340519) | |
| 198-310, gnl|rn3|chr18 (26933244-26933409) | |
| 311-420, gnl|bosTau2|chr7 (34511821-34511931) | |
| 311-420, gnl|canFam2|chr11 (28638863-28638960) | |
| 311-420, gnl|dasNov1|scaffold_5055 (53933-54030) | |
| 311-420, gnl|echTel1|scaffold_323979 (98237-98334) | |
| 311-420, gnl|galGal2|chr13 (13177398-13177298) | |
| 311-420, gnl|hg17|chr5 (137299906-137300003) | |
| 311-420, gnl|Hg17|chr5 (137299908-137300017) | |
| 311-420, gnl|loxAfr1|scaffold_2383 (72972-73069) | |
| 311-420, gnl|mm7|chr18 (34814194-34814287) | |
| 311-420, gnl|Mm7|chr18 (34814196-34814299) | |
| 311-420, gnl|monDom2|scaffold_6 (71650347-71650250) | |
| 311-420, gnl|oryCun1|scaffold_170431 (19862-19955) | |
| 311-420, gnl|panTro1|chr4 (143903523-143903620) | |
| 311-420, gnl|rheMac2|chr6 (134340915-134341012) | |
| 311-420, gnl|rn3|chr18 (26934108-26934188) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) | |
| tes (0.207814) |