Ss1.1-rtes14_j16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCGCGGCCCACGCTGGTCCACAGCGCCGGACCGCGCTCCGTGACCCGGCCGCGACGTC CCCATCCCTTGGGTCTGGCCCTCCGCCCTCCCCAGCAGGGCCGCCCTAGCCCTGGGCGAG CCGCCCTCGAGAAGACCTGGGCACAGCCGTCTACAAAAAGCGAACGATGGAGGTGTGTTT AGCAAACGGTCAGAACTGAATTCCCACGGAGATATCTTCGTTTAGGAAAGTTTCGCTTCA CCAGCTCTACTTGGTTGGTTGCAAAAGAAATAGCTCTCCCGCGGAGGAAGCTGTTCTGCT CTCTCTCGGCGGGATCCCTGGAGAGGAAACAGTTGGGATTACGATTTGGGATGTGGTACT GGAAAGATGAAACCAGAACTCTTGAATTCAGAAGATGATGGAACTGGTGTCAAAGCATTA GCAGTTGAAGAAAATTTAAGCGATTGGCCAAATCACACAGCTCAGAGGAATAAGTATCTT GACAATTTCCTTATGGCGTTGTTGTACTATTTATATTATTTCTTGGAAAAAATCTCATTT GAGAAGGAACCCAAAAGCTATATGGTGGGCCTTGTAGAGAAAAAAGAGATGGAACTTGTT ATCAGTAAGTTAGAAGAAGCACAGAAATACTTGGCGCAGAAGTACTGTGTCCTCATCCTG GGCTTGGGAATGCCTGATAAGCATCACATGTGCTGTGGAAAGGAGAAAATATCAGATACA CAGAAAGACTGGAAATTCTTTGAGTCCTTTTATACCTTCTGTACGTACGTAGCCTGGATT GTCTTCCGACGTCAGCACTTCACAGAGATCGAGGAAGAAATAGGGAGGCTCTTTCGTTCC AGCATGTTCAACATTCCTCGAAGGAAACGTGAGGATGAAGCATCCGGAGGGGAGAAGAAA CGCATGACTTTTGTACAGTTCAGGAGAATGATGGCAAGACGCCCAGCGATTAAAAAAGCC ATCAACATGCGCTCTCCAGTTGTGTCCACTCTGCTGCCCTCTCTCAGAGAGAAAGCTCAG AATGTCTCTGAGAAAAAGTACCGTCACGTAGACATCAAATTCCCAGCTAAGACGCAAGAG CACAAGGAAAACCTGGACTCTATGTACATGCCAGTAGTTGGCATCTTGGGGGAGCCTCGG TGTCAGTTCAACCCCCATACACTGATCCCCCTCAATCCAGAAGAAAACATGAAGTCGGCT GGGAGACCTTCTTCCCTGTTAGAAAGAAAGAACGTGCGGATTCAGGATACACTGGATTTA GTCATGAGAAAACTGTCTTCTTAAACCACATCCCCTAAATAATCTGGTACATTCCATTTC TATAATTAAGCTCCTGTATTTGAAGTAAACTACTTTGACTTAATCACTTTGTATAGGACT AGTGTTTATTATTAAACTTTAAAAATTGTTCAAGTTATTTTGTCACAAGTTCAGCAACAG ACGATTAAAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCGCGGCCCACGCTGGTCCACAGCGCCGGACCGCGCTCCGTGACCCGGCCGCGACGTC CCCATCCCTTGGGTCTGGCCCTCCGCCCTCCCCAGCAGGGCCGCCCTAGCCCTGGGCGAG CCGCCCTCGAGAAGACCTGGGCACAGCCGTCTACAAAAAGCGAACGATGGAGGTGTGTTT AGCAAACGGTCAGAACTGAATTCCCACGGAGATATCTTCGTTTAGGAAAGTTTCGCTTCA CCAGCTCTACTTGGTTGGTTGCAAAAGAAATAGCTCTCCCGCGGAGGAAGCTGTTCTGCT CTCTCTCGGCGGGATCCCTGGAGAGGAAACAGTTGGGATTACGATTTGGGATGTGGTACT GGAAAGATGAAACCAGAACTCTTGAATTCAGAAGATGATGGAACTGGTGTCAAAGCATTA GCAGTTGAAGAAAATTTAAGCGATTGGCCAAATCACACAGCTCAGAGGAATAAGTATCTT GACAATTTCCTTATGGCGTTGTTGTACTATTTATATTATTTCTTGGAAAAAATCTCATTT GAGAAGGAACCCAAAAGCTATATGGTGGGCCTTGTAGAGAAAAAAGAGATGGAACTTGTT ATCAGTAAGTTAGAAGAAGCACAGAAATACTTGGCGCAGAAGTACTGTGTCCTCATCCTG GGCTTGGGAATGCCTGATAAGCATCACATGTGCTGTGGAAAGGAGAAAATATCAGATACA CAGAAAGACTGGAAATTCTTTGAGTCCTTTTATACCTTCTGTACGTACGTAGCCTGGATT GTCTTCCGACGTCAGCACTTCACAGAGATCGAGGAAGAAATAGGGAGGCTCTTTCGTTCC AGCATGTTCAACATTCCTCGAAGGAAACGTGAGGATGAAGCATCCGGAGGGGAGAAGAAA CGCATGACTTTTGTACAGTTCAGGAGAATGATGGCAAGACGCCCAGCGATTAAAAAAGCC ATCAACATGCGCTCTCCAGTTGTGTCCACTCTGCTGCCCTCTCTCAGAGAGAAAGCTCAG AATGTCTCTGAGAAAAAGTACCGTCACGTAGACATCAAATTCCCAGCTAAGACGCAAGAG CACAAGGAAAACCTGGACTCTATGTACATGCCAGTAGTTGGCATCTTGGGGGAGCCTCGG TGTCAGTTCAACCCCCATACACTGATCCCCCTCAATCCAGAAGAAAACATGAAGTCGGCT GGGAGACCTTCTTCCCTGTTAGAAAGAAAGAACGTGCGGATTCAGGATACACTGGATTTA GTCATGAGAAAACTGTCTTCTTAAACCACATCCCCTAAATAATCTGGTACATTCCATTTC TATAATTAAGCTCCTGTATTTGAAGTAAACTACTTTGACTTAATCACTTTGTATAGGACT AGTGTTTATTATTAAACTTTAAAAATTGTTCAAGTTATTTTGTCACAAGTTCAGCAACAG ACGATTAAAGAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 215-329, - strand, RNAz p=0.944015 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 215-329, - strand, RNAz p=0.944015 |
| Aligned organism(s): 81 entry(ies) | More info |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
| 2-329, gnl|bosTau2|chr10 (51565112-51564775) | |
| 2-329, gnl|canFam2|chr8 (42004826-42005556) | |
| 2-329, gnl|echTel1|scaffold_301791 (752-96) | |
| 2-329, gnl|hg17|chr14 (64086140-64086843) | |
| 2-329, gnl|Hg17|chr14 (64086588-64086927) | |
| 2-329, gnl|loxAfr1|scaffold_22983 (41113-40384) | |
| 2-329, gnl|mm7|chr12 (74375583-74376258) | |
| 2-329, gnl|panTro1|chr15 (63654354-63655059) | |
| 2-329, gnl|rheMac2|chr7 (127549940-127550648) | |
| 2-329, gnl|rn3|chr6 (99014023-99014691) | |
| 461-567, gnl|bosTau2|chr10 (51553821-51553715) | |
| 461-567, gnl|canFam2|chr8 (42020326-42020641) | |
| 461-567, gnl|dasNov1|scaffold_11163 (6378-6173) | |
| 461-567, gnl|echTel1|scaffold_297403 (24108-23896) | |
| 461-567, gnl|hg17|chr14 (64104721-64104933) | |
| 461-567, gnl|Hg17|chr14 (64104813-64104919) | |
| 461-567, gnl|loxAfr1|scaffold_128612 (417-188) | |
| 461-567, gnl|mm7|chr12 (74386941-74387134) | |
| 461-567, gnl|Mm7|chr12 (74387014-74387120) | |
| 461-567, gnl|monDom2|scaffold_8 (78270893-78271099) | |
| 461-567, gnl|oryCun1|scaffold_145187 (6969-6751) | |
| 461-567, gnl|panTro1|chr15 (63672985-63673197) | |
| 461-567, gnl|rheMac2|chr7 (127570438-127570648) | |
| 568-702, gnl|bosTau2|chr10 (51548692-51548558) | |
| 568-702, gnl|canFam2|chr8 (42025564-42025782) | |
| 568-702, gnl|canFam2|chr8 (42025633-42025767) | |
| 568-702, gnl|dasNov1|scaffold_11163 (819-593) | |
| 568-702, gnl|echTel1|scaffold_297403 (20441-20206) | |
| 568-702, gnl|echTel1|scaffold_297403 (20351-20234) | |
| 568-702, gnl|hg17|chr14 (64110824-64111076) | |
| 568-702, gnl|Hg17|chr14 (64110927-64111061) | |
| 568-702, gnl|hg17|chr4 (110052361-110052476) | |
| 568-702, gnl|loxAfr1|scaffold_1532 (3747-3952) | |
| 568-702, gnl|mm7|chr12 (74394259-74394479) | |
| 568-702, gnl|mm7|chr12 (74394331-74394464) | |
| 568-702, gnl|Mm7|chr12 (74394330-74394464) | |
| 568-702, gnl|monDom2|scaffold_8 (78277974-78278192) | |
| 568-702, gnl|panTro1|chr15 (63679090-63679342) | |
| 568-702, gnl|panTro1|chr3 (126542535-126542650) | |
| 568-702, gnl|rheMac2|chr5 (101680413-101680545) | |
| 568-702, gnl|rheMac2|chr7 (127576838-127577090) | |
| 568-702, gnl|rn3|chr6 (99027111-99027324) | |
| 568-702, gnl|rn3|chr6 (99027176-99027309) | |
| 743-924, gnl|bosTau2|chr10 (51543784-51543603) | |
| 743-924, gnl|canFam2|chr8 (42035396-42035653) | |
| 743-924, gnl|canFam2|chr8 (42035430-42035611) | |
| 743-924, gnl|dasNov1|scaffold_82109 (7187-6940) | |
| 743-924, gnl|dasNov1|scaffold_82109 (7140-6976) | |
| 743-924, gnl|echTel1|scaffold_297403 (13127-12874) | |
| 743-924, gnl|echTel1|scaffold_297403 (13091-12815) | |
| 743-924, gnl|hg17|chr14 (64123624-64123883) | |
| 743-924, gnl|Hg17|chr14 (64123663-64123844) | |
| 743-924, gnl|hg17|chr4 (110052515-110052693) | |
| 743-924, gnl|loxAfr1|scaffold_22983 (2363-2109) | |
| 743-924, gnl|loxAfr1|scaffold_22983 (2327-2061) | |
| 743-924, gnl|mm7|chr12 (74396103-74396329) | |
| 743-924, gnl|mm7|chr12 (74396137-74396318) | |
| 743-924, gnl|Mm7|chr12 (74396140-74396321) | |
| 743-924, gnl|monDom2|scaffold_8 (78282653-78282896) | |
| 743-924, gnl|oryCun1|scaffold_166510 (6877-6626) | |
| 743-924, gnl|oryCun1|scaffold_166510 (6836-6662) | |
| 743-924, gnl|panTro1|chr15 (63691862-63692139) | |
| 743-924, gnl|panTro1|chr3 (126542689-126542867) | |
| 743-924, gnl|rheMac2|chr5 (101680583-101680761) | |
| 743-924, gnl|rheMac2|chr7 (127590834-127591101) | |
| 743-924, gnl|rn3|chr6 (99030339-99030589) | |
| 743-924, gnl|rn3|chr6 (99030374-99030555) | |
| 1238-1442, gnl|bosTau2|chr10 (51542853-51542653) | |
| 1238-1442, gnl|canFam2|chr8 (42036443-42036670) | |
| 1238-1442, gnl|dasNov1|scaffold_82109 (6079-5843) | |
| 1238-1442, gnl|echTel1|scaffold_297403 (11629-11414) | |
| 1238-1442, gnl|hg17|chr14 (64125744-64125949) | |
| 1238-1442, gnl|Hg17|chr14 (64125745-64125930) | |
| 1238-1442, gnl|loxAfr1|scaffold_22983 (1264-1033) | |
| 1238-1442, gnl|mm7|chr12 (74397426-74397668) | |
| 1238-1442, gnl|Mm7|chr12 (74397427-74397645) | |
| 1238-1442, gnl|monDom2|scaffold_8 (78284943-78285165) | |
| 1238-1442, gnl|oryCun1|scaffold_166510 (5455-5224) | |
| 1238-1442, gnl|panTro1|chr15 (63693993-63694197) | |
| 1238-1442, gnl|rheMac2|chr7 (127592965-127593183) | |
| 1238-1442, gnl|rn3|chr6 (99031737-99031974) |
| Aligned organism(s): 81 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-329, gnl|bosTau2|chr10 (51565112-51564775) | |
| 2-329, gnl|canFam2|chr8 (42004826-42005556) | |
| 2-329, gnl|echTel1|scaffold_301791 (752-96) | |
| 2-329, gnl|hg17|chr14 (64086140-64086843) | |
| 2-329, gnl|Hg17|chr14 (64086588-64086927) | |
| 2-329, gnl|loxAfr1|scaffold_22983 (41113-40384) | |
| 2-329, gnl|mm7|chr12 (74375583-74376258) | |
| 2-329, gnl|panTro1|chr15 (63654354-63655059) | |
| 2-329, gnl|rheMac2|chr7 (127549940-127550648) | |
| 2-329, gnl|rn3|chr6 (99014023-99014691) | |
| 461-567, gnl|bosTau2|chr10 (51553821-51553715) | |
| 461-567, gnl|canFam2|chr8 (42020326-42020641) | |
| 461-567, gnl|dasNov1|scaffold_11163 (6378-6173) | |
| 461-567, gnl|echTel1|scaffold_297403 (24108-23896) | |
| 461-567, gnl|hg17|chr14 (64104721-64104933) | |
| 461-567, gnl|Hg17|chr14 (64104813-64104919) | |
| 461-567, gnl|loxAfr1|scaffold_128612 (417-188) | |
| 461-567, gnl|mm7|chr12 (74386941-74387134) | |
| 461-567, gnl|Mm7|chr12 (74387014-74387120) | |
| 461-567, gnl|monDom2|scaffold_8 (78270893-78271099) | |
| 461-567, gnl|oryCun1|scaffold_145187 (6969-6751) | |
| 461-567, gnl|panTro1|chr15 (63672985-63673197) | |
| 461-567, gnl|rheMac2|chr7 (127570438-127570648) | |
| 568-702, gnl|bosTau2|chr10 (51548692-51548558) | |
| 568-702, gnl|canFam2|chr8 (42025564-42025782) | |
| 568-702, gnl|canFam2|chr8 (42025633-42025767) | |
| 568-702, gnl|dasNov1|scaffold_11163 (819-593) | |
| 568-702, gnl|echTel1|scaffold_297403 (20441-20206) | |
| 568-702, gnl|echTel1|scaffold_297403 (20351-20234) | |
| 568-702, gnl|hg17|chr14 (64110824-64111076) | |
| 568-702, gnl|Hg17|chr14 (64110927-64111061) | |
| 568-702, gnl|hg17|chr4 (110052361-110052476) | |
| 568-702, gnl|loxAfr1|scaffold_1532 (3747-3952) | |
| 568-702, gnl|mm7|chr12 (74394259-74394479) | |
| 568-702, gnl|mm7|chr12 (74394331-74394464) | |
| 568-702, gnl|Mm7|chr12 (74394330-74394464) | |
| 568-702, gnl|monDom2|scaffold_8 (78277974-78278192) | |
| 568-702, gnl|panTro1|chr15 (63679090-63679342) | |
| 568-702, gnl|panTro1|chr3 (126542535-126542650) | |
| 568-702, gnl|rheMac2|chr5 (101680413-101680545) | |
| 568-702, gnl|rheMac2|chr7 (127576838-127577090) | |
| 568-702, gnl|rn3|chr6 (99027111-99027324) | |
| 568-702, gnl|rn3|chr6 (99027176-99027309) | |
| 743-924, gnl|bosTau2|chr10 (51543784-51543603) | |
| 743-924, gnl|canFam2|chr8 (42035396-42035653) | |
| 743-924, gnl|canFam2|chr8 (42035430-42035611) | |
| 743-924, gnl|dasNov1|scaffold_82109 (7187-6940) | |
| 743-924, gnl|dasNov1|scaffold_82109 (7140-6976) | |
| 743-924, gnl|echTel1|scaffold_297403 (13127-12874) | |
| 743-924, gnl|echTel1|scaffold_297403 (13091-12815) | |
| 743-924, gnl|hg17|chr14 (64123624-64123883) | |
| 743-924, gnl|Hg17|chr14 (64123663-64123844) | |
| 743-924, gnl|hg17|chr4 (110052515-110052693) | |
| 743-924, gnl|loxAfr1|scaffold_22983 (2363-2109) | |
| 743-924, gnl|loxAfr1|scaffold_22983 (2327-2061) | |
| 743-924, gnl|mm7|chr12 (74396103-74396329) | |
| 743-924, gnl|mm7|chr12 (74396137-74396318) | |
| 743-924, gnl|Mm7|chr12 (74396140-74396321) | |
| 743-924, gnl|monDom2|scaffold_8 (78282653-78282896) | |
| 743-924, gnl|oryCun1|scaffold_166510 (6877-6626) | |
| 743-924, gnl|oryCun1|scaffold_166510 (6836-6662) | |
| 743-924, gnl|panTro1|chr15 (63691862-63692139) | |
| 743-924, gnl|panTro1|chr3 (126542689-126542867) | |
| 743-924, gnl|rheMac2|chr5 (101680583-101680761) | |
| 743-924, gnl|rheMac2|chr7 (127590834-127591101) | |
| 743-924, gnl|rn3|chr6 (99030339-99030589) | |
| 743-924, gnl|rn3|chr6 (99030374-99030555) | |
| 1238-1442, gnl|bosTau2|chr10 (51542853-51542653) | |
| 1238-1442, gnl|canFam2|chr8 (42036443-42036670) | |
| 1238-1442, gnl|dasNov1|scaffold_82109 (6079-5843) | |
| 1238-1442, gnl|echTel1|scaffold_297403 (11629-11414) | |
| 1238-1442, gnl|hg17|chr14 (64125744-64125949) | |
| 1238-1442, gnl|Hg17|chr14 (64125745-64125930) | |
| 1238-1442, gnl|loxAfr1|scaffold_22983 (1264-1033) | |
| 1238-1442, gnl|mm7|chr12 (74397426-74397668) | |
| 1238-1442, gnl|Mm7|chr12 (74397427-74397645) | |
| 1238-1442, gnl|monDom2|scaffold_8 (78284943-78285165) | |
| 1238-1442, gnl|oryCun1|scaffold_166510 (5455-5224) | |
| 1238-1442, gnl|panTro1|chr15 (63693993-63694197) | |
| 1238-1442, gnl|rheMac2|chr7 (127592965-127593183) | |
| 1238-1442, gnl|rn3|chr6 (99031737-99031974) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |