Non-Coding RNA Search

Ss1.1-rtes16_n15.5

Sequence:


               
               AAAAGAGGGATGATGTGTCTTCATCTTCAAATCTCAAAGAGCACAAAGAAGCTTGGGCAT
CCTCAGGGGCAGAAAAACCCTCCTTTAACAGCGTTGATGTGTCCTTGACGTCCATCTACA
GCTTCACTGATGACCTGGGCTATCAAGGGAGCCAGGACCTGACCAGTGAAGAAGATCTCA
GCCCTGTTCGAGCCAAGAATCAGAAGCTGAATAAGGTTTCCGTTTTCCGAATGAGGCGAA
ATAGGATGAGGGGGCAAGACGAGGAAGACGAGGATGAGGAGGACGAGGTAGAGTGCTTTC
CTACTTCTTTGGGATCCCCTAGGGTGAGACAGAAGCAACACTTATACTCAAAGACCGGCC
AACTGAGGCAGAAGGAGCCCTTGAGCATCTTGGAAAATAGCCTGAGCACCCCCACCTCCA
AGACCAAATCGTCCCGCTGGAGTCTGACCGGGTTCCATCAATACTTGTGTAGCTGCTGCC
ACAAGAATCCGAAGTCAGTGGAGGAAAACAAGGCATTGGATTCCAAAGAAAGGAGAGACC
CAAGTGAAAACAGAGTCATGGTTTCCATTAATGAGCAAGGGAGGCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAGGGATGATGTGTCTTCATCTTCAAATCTCAAAGAGCACAAAGAAGCTTGGGCAT
CCTCAGGGGCAGAAAAACCCTCCTTTAACAGCGTTGATGTGTCCTTGACGTCCATCTACA
GCTTCACTGATGACCTGGGCTATCAAGGGAGCCAGGACCTGACCAGTGAAGAAGATCTCA
GCCCTGTTCGAGCCAAGAATCAGAAGCTGAATAAGGTTTCCGTTTTCCGAATGAGGCGAA
ATAGGATGAGGGGGCAAGACGAGGAAGACGAGGATGAGGAGGACGAGGTAGAGTGCTTTC
CTACTTCTTTGGGATCCCCTAGGGTGAGACAGAAGCAACACTTATACTCAAAGACCGGCC
AACTGAGGCAGAAGGAGCCCTTGAGCATCTTGGAAAATAGCCTGAGCACCCCCACCTCCA
AGACCAAATCGTCCCGCTGGAGTCTGACCGGGTTCCATCAATACTTGTGTAGCTGCTGCC
ACAAGAATCCGAAGTCAGTGGAGGAAAACAAGGCATTGGATTCCAAAGAAAGGAGAGACC
CAAGTGAAAACAGAGTCATGGTTTCCATTAATGAGCAAGGGAGGCAAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               18-137, - strand, RNAz p=0.742112
               

               
               168-280, + strand, RNAz p=0.68529

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               18-137, - strand, RNAz p=0.742112
               

               
               168-280, + strand, RNAz p=0.68529

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               33-138, + strand, RNAmicro p=0.987289

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               33-138, + strand, RNAmicro p=0.987289

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               18-166, gnl|bosTau2|chr3 (10594905-10594757)
               

               
               18-166, gnl|canFam2|chr7 (44760937-44760734)
               

               
               18-166, gnl|dasNov1|scaffold_115309 (2047-2274)
               

               
               18-166, gnl|echTel1|scaffold_237496 (1218-1410)
               

               
               18-166, gnl|hg17|chr1 (152813553-152813782)
               

               
               18-166, gnl|Hg17|chr1 (152813579-152813724)
               

               
               18-166, gnl|loxAfr1|scaffold_26184 (6296-6529)
               

               
               18-166, gnl|monDom2|scaffold_59 (1522907-1522698)
               

               
               18-166, gnl|panTro1|chr1 (134756776-134757005)
               


               
               168-587, gnl|bosTau2|chr3 (10593691-10593281)
               

               
               168-587, gnl|Hg17|chr1 (152815691-152816110)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-166, gnl|bosTau2|chr3 (10594905-10594757)
               

               
               18-166, gnl|canFam2|chr7 (44760937-44760734)
               

               
               18-166, gnl|dasNov1|scaffold_115309 (2047-2274)
               

               
               18-166, gnl|echTel1|scaffold_237496 (1218-1410)
               

               
               18-166, gnl|hg17|chr1 (152813553-152813782)
               

               
               18-166, gnl|Hg17|chr1 (152813579-152813724)
               

               
               18-166, gnl|loxAfr1|scaffold_26184 (6296-6529)
               

               
               18-166, gnl|monDom2|scaffold_59 (1522907-1522698)
               

               
               18-166, gnl|panTro1|chr1 (134756776-134757005)
               


               
               168-587, gnl|bosTau2|chr3 (10593691-10593281)
               

               
               168-587, gnl|Hg17|chr1 (152815691-152816110)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.58548)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.207814)

	18-137, - strand, RNAz p=0.742112
	168-280, + strand, RNAz p=0.68529

	18-166, gnl\|bosTau2\|chr3 (10594905-10594757)
	18-166, gnl\|canFam2\|chr7 (44760937-44760734)
	18-166, gnl\|dasNov1\|scaffold_115309 (2047-2274)
	18-166, gnl\|echTel1\|scaffold_237496 (1218-1410)
	18-166, gnl\|hg17\|chr1 (152813553-152813782)
	18-166, gnl\|Hg17\|chr1 (152813579-152813724)
	18-166, gnl\|loxAfr1\|scaffold_26184 (6296-6529)
	18-166, gnl\|monDom2\|scaffold_59 (1522907-1522698)
	18-166, gnl\|panTro1\|chr1 (134756776-134757005)

	168-587, gnl\|bosTau2\|chr3 (10593691-10593281)
	168-587, gnl\|Hg17\|chr1 (152815691-152816110)