Non-Coding RNA Search

Ss1.1-rtes16_p3.5

Sequence:


               
               GGTGCACAGCAGGCCCCTGAAAACTATGGTGACATTCTATACCTTGCTGATGATGCCTAA
AGAGTCAAACTACCCAGAGGGGGTACCATGCAGAGGGAGACCGCAAGCAGGTCCATCCAT
GTTGCTGCAAATGATGCAAATGAGCAGGTTTCTTGAGAGACAAACCATGGGAACTGGAGG
AAGAGGAGGGTGCAGCCATTTGTCATTCAAACGGGCCTCCACTGGATGCTGTTCCAGCAA
CTGAACCTGGCTTTAGAGCAGCCAGCCCTATCCAGGGCTTTGAAAAGGACACCAGAATGT
TCTAGAAGCAAAGCTGTGACTCTGGGACTCCTCTCTCCTGGCAGCACCATCAGCAATCCC
TGCCATTTCCTGGGGGATTTCATCCCTTATTATTGCCTCCCATCCTTGCTCATTTGTGAG
GAGATGGTTAAGAGCTTGGGCGCTGGCAGCTGACACACTTGAATTTGAATTCCGGCTCTG
CTACTTACTGAAGGGTGGCTTTGCACATGCTCAACTACTCTGGCATTTCATCCTCTGCAA
AGTGATGGAGACAAGAGACAGGTCTGGAGGGGGAGAGGTTCAAAGAGGAACATTCATGAA
AGTTCTCACACAGCTCCTGTCATGCGGTGTGCCCTCAATAAAAGAGATTGATTATTAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGCACAGCAGGCCCCTGAAAACTATGGTGACATTCTATACCTTGCTGATGATGCCTAA
AGAGTCAAACTACCCAGAGGGGGTACCATGCAGAGGGAGACCGCAAGCAGGTCCATCCAT
GTTGCTGCAAATGATGCAAATGAGCAGGTTTCTTGAGAGACAAACCATGGGAACTGGAGG
AAGAGGAGGGTGCAGCCATTTGTCATTCAAACGGGCCTCCACTGGATGCTGTTCCAGCAA
CTGAACCTGGCTTTAGAGCAGCCAGCCCTATCCAGGGCTTTGAAAAGGACACCAGAATGT
TCTAGAAGCAAAGCTGTGACTCTGGGACTCCTCTCTCCTGGCAGCACCATCAGCAATCCC
TGCCATTTCCTGGGGGATTTCATCCCTTATTATTGCCTCCCATCCTTGCTCATTTGTGAG
GAGATGGTTAAGAGCTTGGGCGCTGGCAGCTGACACACTTGAATTTGAATTCCGGCTCTG
CTACTTACTGAAGGGTGGCTTTGCACATGCTCAACTACTCTGGCATTTCATCCTCTGCAA
AGTGATGGAGACAAGAGACAGGTCTGGAGGGGGAGAGGTTCAAAGAGGAACATTCATGAA
AGTTCTCACACAGCTCCTGTCATGCGGTGTGCCCTCAATAAAAGAGATTGATTATTAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               255-645, gnl|bosTau2|chr3 (79380284-79380673)
               

               
               255-645, gnl|Hg17|chr1 (34307462-34307078)
               

               
               255-645, gnl|Mm7|chr4 (127422362-127422699)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               255-645, gnl|bosTau2|chr3 (79380284-79380673)
               

               
               255-645, gnl|Hg17|chr1 (34307462-34307078)
               

               
               255-645, gnl|Mm7|chr4 (127422362-127422699)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.623441)
               

               
               cte (0.29274)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)
               

               
               cte (0.29274)

	255-645, gnl\|bosTau2\|chr3 (79380284-79380673)
	255-645, gnl\|Hg17\|chr1 (34307462-34307078)
	255-645, gnl\|Mm7\|chr4 (127422362-127422699)