Non-Coding RNA Search

Ss1.1-rtes17_d17.5

Sequence:


               
               AAAATTCACAATATCACTTGCCCGAAAAGAAGCCTCTGGCCCGTAAAGGGCTTCCACCAA
TCAGAACACAGAGTCTCCCACCCATCACCCTGGGCCATAACTTCCTGACAGCCTCCCAGG
GGGCCACTTCCCATGCTGGCCTGAGCCCTGGTACTCATAACACAGCCCAGCGATCTCAGA
AAAGCCGAAGTGAGCAGGATTTATTGAATAACAGAACTGGCTGCCAGGCATTGCTAGATA
ACCCTTGGAAAGGTGACTCTAACCCAGTGTTCTATAAAGCTTGGACTGTGTCTTCTTCTG
ATAAGCTGTTAGACAGGTTACTTACCAGCAGATCCGGTCACCAGGAGGTGTCAGGGCCAC
CACATCTTCCTCATCTACATAATCCGTCATCAGGACAAAATTTTCAGCATCTCTCCCCAA
AGAGACCCAAAATCAGGGATCTTCCTTTTACCCGGAACAACTTAGCTCCCCTACCAGACC
AAAAATTTCTATCTGGAGAACCTCTTCGGACAAACCGAGTCCTTCCTGCTATTCCAAGCC
AGCGAGGACACAGCCCACCAACTGAAGAGAGCGAAAACTCCGCCAATCCCACCAATGATA
AAAATTAACTGTGGGTCACTGACTGTAAAAGATATAGATTATATATATTTTCAATTGTCA
AAGAATAAGATTACTCTAGTTTGTAAAACAAAGACTAATTTAGTAAATTGCATTCTATAA
GCCATTCATGGTTTTATAACTCAAAATTCTTTATTCCAAATAAGCAGTTAGAATCTTTGA
CTGTGCTTATATTATAAGTCTGTGAGTTTCTGTGACCTCTACATGCCAAAATAAAAATTC
ACAATATGTTATCAGCAGGGAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTCACAATATCACTTGCCCGAAAAGAAGCCTCTGGCCCGTAAAGGGCTTCCACCAA
TCAGAACACAGAGTCTCCCACCCATCACCCTGGGCCATAACTTCCTGACAGCCTCCCAGG
GGGCCACTTCCCATGCTGGCCTGAGCCCTGGTACTCATAACACAGCCCAGCGATCTCAGA
AAAGCCGAAGTGAGCAGGATTTATTGAATAACAGAACTGGCTGCCAGGCATTGCTAGATA
ACCCTTGGAAAGGTGACTCTAACCCAGTGTTCTATAAAGCTTGGACTGTGTCTTCTTCTG
ATAAGCTGTTAGACAGGTTACTTACCAGCAGATCCGGTCACCAGGAGGTGTCAGGGCCAC
CACATCTTCCTCATCTACATAATCCGTCATCAGGACAAAATTTTCAGCATCTCTCCCCAA
AGAGACCCAAAATCAGGGATCTTCCTTTTACCCGGAACAACTTAGCTCCCCTACCAGACC
AAAAATTTCTATCTGGAGAACCTCTTCGGACAAACCGAGTCCTTCCTGCTATTCCAAGCC
AGCGAGGACACAGCCCACCAACTGAAGAGAGCGAAAACTCCGCCAATCCCACCAATGATA
AAAATTAACTGTGGGTCACTGACTGTAAAAGATATAGATTATATATATTTTCAATTGTCA
AAGAATAAGATTACTCTAGTTTGTAAAACAAAGACTAATTTAGTAAATTGCATTCTATAA
GCCATTCATGGTTTTATAACTCAAAATTCTTTATTCCAAATAAGCAGTTAGAATCTTTGA
CTGTGCTTATATTATAAGTCTGTGAGTTTCTGTGACCTCTACATGCCAAAATAAAAATTC
ACAATATGTTATCAGCAGGGAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CTM6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CTM6_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, - strand, RNAz p=0.610178

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.610178

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-394, gnl|bosTau2|chr20 (13130986-13131379)
               

               
               1-394, gnl|Hg17|chr5 (55443097-55442701)
               

               
               1-394, gnl|Mm7|chr13 (109523851-109524247)
               


               
               487-729, gnl|bosTau2|chr20 (13144417-13144659)
               

               
               487-729, gnl|canFam2|chr2 (46189897-46190209)
               

               
               487-729, gnl|dasNov1|scaffold_4904 (39220-38914)
               

               
               487-729, gnl|echTel1|scaffold_307190 (1399-1094)
               

               
               487-729, gnl|hg17|chr5 (55431650-55431953)
               

               
               487-729, gnl|Hg17|chr5 (55431888-55431649)
               

               
               487-729, gnl|loxAfr1|scaffold_99950 (4845-5157)
               

               
               487-729, gnl|mm7|chr13 (109539597-109539234)
               

               
               487-729, gnl|Mm7|chr13 (109539317-109539600)
               

               
               487-729, gnl|monDom2|scaffold_27 (18654890-18655194)
               

               
               487-729, gnl|oryCun1|scaffold_200318 (88674-89011)
               

               
               487-729, gnl|panTro1|chr4 (60753413-60753110)
               

               
               487-729, gnl|rheMac2|chr6 (53744441-53744744)
               

               
               487-729, gnl|rn3|chr2 (43629151-43628827)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-394, gnl|bosTau2|chr20 (13130986-13131379)
               

               
               1-394, gnl|Hg17|chr5 (55443097-55442701)
               

               
               1-394, gnl|Mm7|chr13 (109523851-109524247)
               


               
               487-729, gnl|bosTau2|chr20 (13144417-13144659)
               

               
               487-729, gnl|canFam2|chr2 (46189897-46190209)
               

               
               487-729, gnl|dasNov1|scaffold_4904 (39220-38914)
               

               
               487-729, gnl|echTel1|scaffold_307190 (1399-1094)
               

               
               487-729, gnl|hg17|chr5 (55431650-55431953)
               

               
               487-729, gnl|Hg17|chr5 (55431888-55431649)
               

               
               487-729, gnl|loxAfr1|scaffold_99950 (4845-5157)
               

               
               487-729, gnl|mm7|chr13 (109539597-109539234)
               

               
               487-729, gnl|Mm7|chr13 (109539317-109539600)
               

               
               487-729, gnl|monDom2|scaffold_27 (18654890-18655194)
               

               
               487-729, gnl|oryCun1|scaffold_200318 (88674-89011)
               

               
               487-729, gnl|panTro1|chr4 (60753413-60753110)
               

               
               487-729, gnl|rheMac2|chr6 (53744441-53744744)
               

               
               487-729, gnl|rn3|chr2 (43629151-43628827)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               tes (0.831255)
               

               
               sag (0.548145)
               

               
               cte (0.29274)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.831255)
               

               
               sag (0.548145)
               

               
               cte (0.29274)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)

	1-394, gnl\|bosTau2\|chr20 (13130986-13131379)
	1-394, gnl\|Hg17\|chr5 (55443097-55442701)
	1-394, gnl\|Mm7\|chr13 (109523851-109524247)

	487-729, gnl\|bosTau2\|chr20 (13144417-13144659)
	487-729, gnl\|canFam2\|chr2 (46189897-46190209)
	487-729, gnl\|dasNov1\|scaffold_4904 (39220-38914)
	487-729, gnl\|echTel1\|scaffold_307190 (1399-1094)
	487-729, gnl\|hg17\|chr5 (55431650-55431953)
	487-729, gnl\|Hg17\|chr5 (55431888-55431649)
	487-729, gnl\|loxAfr1\|scaffold_99950 (4845-5157)
	487-729, gnl\|mm7\|chr13 (109539597-109539234)
	487-729, gnl\|Mm7\|chr13 (109539317-109539600)
	487-729, gnl\|monDom2\|scaffold_27 (18654890-18655194)
	487-729, gnl\|oryCun1\|scaffold_200318 (88674-89011)
	487-729, gnl\|panTro1\|chr4 (60753413-60753110)
	487-729, gnl\|rheMac2\|chr6 (53744441-53744744)
	487-729, gnl\|rn3\|chr2 (43629151-43628827)

	tes (0.831255)
	sag (0.548145)
	cte (0.29274)
	lyg (0.133103)
	ret (0.128733)