Non-Coding RNA Search

Ss1.1-rtes17_h11.5

Sequence:


               
               TTACCATCTTAGTAGTTCTGGGATTATCAAGCTTGTGCTGAAGCATAGTCTAAGAATTGT
GACTCAATACTGGTGATGGTTGGAGGAGAAGGAAGGAAGGTAGAAAAAAAGGAAGGAAGG
GAAGGAGGGAGGAGGAGGATGGGTGAATGGATGCCTGAATGGATGGATTTATAACAAGGT
CTTTGCCAAGTTCATCAAGGGATTGTAGGGAGGATTTGAAGATAACAGTGCTTATGAAGC
GCTCAGACTTAAACCCAGTAAATGTTAGTTGGATTTGATTTTCCCCTACAAAGAAAAGGA
AAATTTTCTTTAAAAACCAGTCCAATTCAAGTGAAGAGCTACAGTTCCTTGTGACACAGT
GATCTTGTTTCCAGCAACACCCTAGCAGCAAGCACATCCTCTGGGGAGGCACCATCTGAC
TAAGAAACTGGACTCTGCTTTCGGTGAGAGTTGCCATGGTTAACAGGATGTCTACAGCCT
ACAAGAGAAGATAGTATATTCTTGCTGGCTGGGATTGCAACACCTGATAAGAGGAGGAAG
CAAGCCAAAAGGGATGGAAGCAGATGGAAGATCTGAGAGGGCCATTATCTCAGAGCACCC
CAGAGAAATGAGACACCTTTGGTAACGCAAGGCCTGTGGAAAATGTCCTGCATGCAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACCATCTTAGTAGTTCTGGGATTATCAAGCTTGTGCTGAAGCATAGTCTAAGAATTGT
GACTCAATACTGGTGATGGTTGGAGGAGAAGGAAGGAAGGTAGAAAAAAAGGAAGGAAGG
GAAGGAGGGAGGAGGAGGATGGGTGAATGGATGCCTGAATGGATGGATTTATAACAAGGT
CTTTGCCAAGTTCATCAAGGGATTGTAGGGAGGATTTGAAGATAACAGTGCTTATGAAGC
GCTCAGACTTAAACCCAGTAAATGTTAGTTGGATTTGATTTTCCCCTACAAAGAAAAGGA
AAATTTTCTTTAAAAACCAGTCCAATTCAAGTGAAGAGCTACAGTTCCTTGTGACACAGT
GATCTTGTTTCCAGCAACACCCTAGCAGCAAGCACATCCTCTGGGGAGGCACCATCTGAC
TAAGAAACTGGACTCTGCTTTCGGTGAGAGTTGCCATGGTTAACAGGATGTCTACAGCCT
ACAAGAGAAGATAGTATATTCTTGCTGGCTGGGATTGCAACACCTGATAAGAGGAGGAAG
CAAGCCAAAAGGGATGGAAGCAGATGGAAGATCTGAGAGGGCCATTATCTCAGAGCACCC
CAGAGAAATGAGACACCTTTGGTAACGCAAGGCCTGTGGAAAATGTCCTGCATGCAATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               460-576, - strand, RNAz p=0.982539

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               460-576, - strand, RNAz p=0.982539

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               75-655, gnl|bosTau2|chr22 (21009904-21010499)
               

               
               75-655, gnl|Hg17|chr3 (73070041-73070615)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-655, gnl|bosTau2|chr22 (21009904-21010499)
               

               
               75-655, gnl|Hg17|chr3 (73070041-73070615)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cte (0.58548)
               

               
               tes (0.415628)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.415628)

	75-655, gnl\|bosTau2\|chr22 (21009904-21010499)
	75-655, gnl\|Hg17\|chr3 (73070041-73070615)