Non-Coding RNA Search

Ss1.1-rtes18_f13.5

Sequence:


               
               GAGATACGAACCTGGCCCATCAGTGCTTCAGGCTGGCTCTGGTTAACAACAACCACCACG
CCGAGGCCTACAACAACCTGGCCGTGCTGGAAATGCGCAAGGGCCACGTGGACCAGGCAA
GAGCACTGTTACAAACTGCATCATCTTTAGCACCCCACATGTACGAGCCGCATTTTAATT
TTGCAACAATTTCTGATAAGATTGGAGATCTCCAGAGAAGCTATGTTGCTGCTCAGAAGT
CTGAAGCAGCATTTCCAGATCATGTGGATACGCAACACTTAATTAAGCAGTTAAAGCAGC
ATTTTGCTATGCTCTGATTTTTCCTTAGACCAACCTATTCTTATGGAGGGGCATTATACA
AGGGACAAGTAGTATGCGTATATGTATGTGTGTGTTATAAACCTGTGCTTGATCTCAGCG
AAGGTGACATAAGGGAATTTAAAGCAGAACGTCTAATGAAAATTTTCTAATAACAACCTT
ATAAGATACTGTTATAAAAGACAGAATTTAAGCATTTGTAAGCAGATTGTGAAACCTCCC
ACATTCTATGGTAGATGTTCATTTATAACCTTTACAAAACATTTTCATGAATTTCCTCAA
ATTTTTATAAATGCACATTTTTAATGTCCTTTAGCCTGGCCATTAGCTATCATGCAGCTT
AAGAGGTCTGATACCTGCCTTTAAAATCGCACTTTTATGGCTAAAAGTGTATCCTTATCC
TAGATACAGACTTTAGATTAAAAATTGTATTTAAAACTATTTTCTACCAAATGCTTGGTG
AGACACTACATTTTCTTATATATTATGCTTTAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATACGAACCTGGCCCATCAGTGCTTCAGGCTGGCTCTGGTTAACAACAACCACCACG
CCGAGGCCTACAACAACCTGGCCGTGCTGGAAATGCGCAAGGGCCACGTGGACCAGGCAA
GAGCACTGTTACAAACTGCATCATCTTTAGCACCCCACATGTACGAGCCGCATTTTAATT
TTGCAACAATTTCTGATAAGATTGGAGATCTCCAGAGAAGCTATGTTGCTGCTCAGAAGT
CTGAAGCAGCATTTCCAGATCATGTGGATACGCAACACTTAATTAAGCAGTTAAAGCAGC
ATTTTGCTATGCTCTGATTTTTCCTTAGACCAACCTATTCTTATGGAGGGGCATTATACA
AGGGACAAGTAGTATGCGTATATGTATGTGTGTGTTATAAACCTGTGCTTGATCTCAGCG
AAGGTGACATAAGGGAATTTAAAGCAGAACGTCTAATGAAAATTTTCTAATAACAACCTT
ATAAGATACTGTTATAAAAGACAGAATTTAAGCATTTGTAAGCAGATTGTGAAACCTCCC
ACATTCTATGGTAGATGTTCATTTATAACCTTTACAAAACATTTTCATGAATTTCCTCAA
ATTTTTATAAATGCACATTTTTAATGTCCTTTAGCCTGGCCATTAGCTATCATGCAGCTT
AAGAGGTCTGATACCTGCCTTTAAAATCGCACTTTTATGGCTAAAAGTGTATCCTTATCC
TAGATACAGACTTTAGATTAAAAATTGTATTTAAAACTATTTTCTACCAAATGCTTGGTG
AGACACTACATTTTCTTATATATTATGCTTTAAAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-317, + strand, RNAz p=0.578689

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-317, + strand, RNAz p=0.578689

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BX247959, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BX247959, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               3-129, gnl|bosTau2|chr10 (68100728-68100856)
               

               
               3-129, gnl|canFam2|chr8 (63147214-63147346)
               

               
               3-129, gnl|dasNov1|scaffold_3320 (50124-49992)
               

               
               3-129, gnl|echTel1|scaffold_218678 (6729-6861)
               

               
               3-129, gnl|fr1|chrUn (34847704-34847573)
               

               
               3-129, gnl|galGal2|chr5 (40112467-40112598)
               

               
               3-129, gnl|hg17|chr14 (88408421-88408552)
               

               
               3-129, gnl|Hg17|chr14 (88408436-88408562)
               

               
               3-129, gnl|mm7|chr12 (96471309-96471440)
               

               
               3-129, gnl|Mm7|chr12 (96471324-96471447)
               

               
               3-129, gnl|monDom2|scaffold_8 (38378698-38378566)
               

               
               3-129, gnl|oryCun1|scaffold_181139 (7755-7885)
               

               
               3-129, gnl|panTro1|chr15 (88665237-88665368)
               

               
               3-129, gnl|rheMac2|chr7 (152076142-152076273)
               

               
               3-129, gnl|rn3|chr6 (123168004-123168135)
               

               
               3-129, gnl|xenTro1|scaffold_22 (1685452-1685583)
               


               
               199-814, gnl|bosTau2|chr10 (68105743-68106352)
               

               
               199-814, gnl|Hg17|chr14 (88413389-88414063)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-129, gnl|bosTau2|chr10 (68100728-68100856)
               

               
               3-129, gnl|canFam2|chr8 (63147214-63147346)
               

               
               3-129, gnl|dasNov1|scaffold_3320 (50124-49992)
               

               
               3-129, gnl|echTel1|scaffold_218678 (6729-6861)
               

               
               3-129, gnl|fr1|chrUn (34847704-34847573)
               

               
               3-129, gnl|galGal2|chr5 (40112467-40112598)
               

               
               3-129, gnl|hg17|chr14 (88408421-88408552)
               

               
               3-129, gnl|Hg17|chr14 (88408436-88408562)
               

               
               3-129, gnl|mm7|chr12 (96471309-96471440)
               

               
               3-129, gnl|Mm7|chr12 (96471324-96471447)
               

               
               3-129, gnl|monDom2|scaffold_8 (38378698-38378566)
               

               
               3-129, gnl|oryCun1|scaffold_181139 (7755-7885)
               

               
               3-129, gnl|panTro1|chr15 (88665237-88665368)
               

               
               3-129, gnl|rheMac2|chr7 (152076142-152076273)
               

               
               3-129, gnl|rn3|chr6 (123168004-123168135)
               

               
               3-129, gnl|xenTro1|scaffold_22 (1685452-1685583)
               


               
               199-814, gnl|bosTau2|chr10 (68105743-68106352)
               

               
               199-814, gnl|Hg17|chr14 (88413389-88414063)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ret (0.3862)
               

               
               tes (0.207814)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.3862)
               

               
               tes (0.207814)
               

               
               fco (0.157208)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ebs (0.118301)

	3-129, gnl\|bosTau2\|chr10 (68100728-68100856)
	3-129, gnl\|canFam2\|chr8 (63147214-63147346)
	3-129, gnl\|dasNov1\|scaffold_3320 (50124-49992)
	3-129, gnl\|echTel1\|scaffold_218678 (6729-6861)
	3-129, gnl\|fr1\|chrUn (34847704-34847573)
	3-129, gnl\|galGal2\|chr5 (40112467-40112598)
	3-129, gnl\|hg17\|chr14 (88408421-88408552)
	3-129, gnl\|Hg17\|chr14 (88408436-88408562)
	3-129, gnl\|mm7\|chr12 (96471309-96471440)
	3-129, gnl\|Mm7\|chr12 (96471324-96471447)
	3-129, gnl\|monDom2\|scaffold_8 (38378698-38378566)
	3-129, gnl\|oryCun1\|scaffold_181139 (7755-7885)
	3-129, gnl\|panTro1\|chr15 (88665237-88665368)
	3-129, gnl\|rheMac2\|chr7 (152076142-152076273)
	3-129, gnl\|rn3\|chr6 (123168004-123168135)
	3-129, gnl\|xenTro1\|scaffold_22 (1685452-1685583)

	199-814, gnl\|bosTau2\|chr10 (68105743-68106352)
	199-814, gnl\|Hg17\|chr14 (88413389-88414063)

	ret (0.3862)
	tes (0.207814)
	fco (0.157208)
	sug (0.127291)
	tra (0.123092)
	ebs (0.118301)