Non-Coding RNA Search

Ss1.1-rtes20_b22.5

Sequence:


               
               TGCTCTTCCTCATCTTCCATCTAGCCTGAGAAGGATGTTCTCCATATAGAGTTAAGTGAG
TGCCTAATCCCTCTTTTTGTAAGACTGTTCCCGCATCTTGAAGAACAACAACTCCATCTT
CAACTTTTTATTCCCTTGATTTTACAGTTTGGTAGATTTCAAACTGGAATAGCTAGCATG
TGCTTGCTAAGTAATTTTAAGCCAGCCTTATCCCATATCCTAGCTGTTTTTAATAGCAGG
TGCAAAAATGGCTCTTTCAGCAAGATTGAAATTGGGAATGTCCTTTTGAATTAGGAAAAA
AATAGGCCATAAATGCATTCCCCAGCACAAGTGGGCATTCTGTGAACTGGTACTGGCCCC
AGGAGGATTTCTTCAACCACTCTCCCGCTCTTGGCCTTGAACCTACCTCTGGATTGGATC
TTACTATTGTAGCTGCTCACAGCATCCTCCTGCATGCTTAGAGTAATGCTTTGGGGGAAC
ACTGGTAAACAGTATTTATTTTTTTCACCTCCTTTCAGAGGATTTGGAGGTAAGTTGCAT
TCATTCATTGAAGCGTCCCTCTTGCTGTCTGATAATAAAAGCTTGCATTTTGTTATATCA
GCATTAATTATAGCCAATATTTAAGGATAAGATTTAGAAAATCTGTCATGGCCCATCATC
AAACTAGGGCTTAGGCTTGCAGCATATCAGCTTTGTTTCAAGCTAGATATCTTTATTTGA
TATCTAAAGTGTTTATTTTAAAAGTGCAAGACTAACAATGTATCAAGAGATCGATACACA
AAGGCAAAGCTCTTTTTTTTTTCCCCATCTAGACACCTCAGTTTATTTTATACATTTGTT
CATTTTTCCTGTTATGTTTTATATAATATATGGATTAACTACAAAATAAAGTAACAGTAA
TAAAATAACAAAAGAGGATAATAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCTTCCTCATCTTCCATCTAGCCTGAGAAGGATGTTCTCCATATAGAGTTAAGTGAG
TGCCTAATCCCTCTTTTTGTAAGACTGTTCCCGCATCTTGAAGAACAACAACTCCATCTT
CAACTTTTTATTCCCTTGATTTTACAGTTTGGTAGATTTCAAACTGGAATAGCTAGCATG
TGCTTGCTAAGTAATTTTAAGCCAGCCTTATCCCATATCCTAGCTGTTTTTAATAGCAGG
TGCAAAAATGGCTCTTTCAGCAAGATTGAAATTGGGAATGTCCTTTTGAATTAGGAAAAA
AATAGGCCATAAATGCATTCCCCAGCACAAGTGGGCATTCTGTGAACTGGTACTGGCCCC
AGGAGGATTTCTTCAACCACTCTCCCGCTCTTGGCCTTGAACCTACCTCTGGATTGGATC
TTACTATTGTAGCTGCTCACAGCATCCTCCTGCATGCTTAGAGTAATGCTTTGGGGGAAC
ACTGGTAAACAGTATTTATTTTTTTCACCTCCTTTCAGAGGATTTGGAGGTAAGTTGCAT
TCATTCATTGAAGCGTCCCTCTTGCTGTCTGATAATAAAAGCTTGCATTTTGTTATATCA
GCATTAATTATAGCCAATATTTAAGGATAAGATTTAGAAAATCTGTCATGGCCCATCATC
AAACTAGGGCTTAGGCTTGCAGCATATCAGCTTTGTTTCAAGCTAGATATCTTTATTTGA
TATCTAAAGTGTTTATTTTAAAAGTGCAAGACTAACAATGTATCAAGAGATCGATACACA
AAGGCAAAGCTCTTTTTTTTTTCCCCATCTAGACACCTCAGTTTATTTTATACATTTGTT
CATTTTTCCTGTTATGTTTTATATAATATATGGATTAACTACAAAATAAAGTAACAGTAA
TAAAATAACAAAAGAGGATAATAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               80-272, - strand, RNAz p=0.627863
               

               
               431-546, + strand, RNAz p=0.715982

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-272, - strand, RNAz p=0.627863
               

               
               431-546, + strand, RNAz p=0.715982

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_152265, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152265, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-923, gnl|bosTau2|chr3 (63697767-63698677)
               

               
               1-923, gnl|Hg17|chr1 (52265182-52266090)
               

               
               1-923, gnl|Mm7|chr4 (108192554-108191653)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-923, gnl|bosTau2|chr3 (63697767-63698677)
               

               
               1-923, gnl|Hg17|chr1 (52265182-52266090)
               

               
               1-923, gnl|Mm7|chr4 (108192554-108191653)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               fco (1.10046)
               

               
               pro (0.512033)
               

               
               sme (0.305437)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (1.10046)
               

               
               pro (0.512033)
               

               
               sme (0.305437)
               

               
               sug (0.254582)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               csk (0.140746)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	80-272, - strand, RNAz p=0.627863
	431-546, + strand, RNAz p=0.715982

	1-923, gnl\|bosTau2\|chr3 (63697767-63698677)
	1-923, gnl\|Hg17\|chr1 (52265182-52266090)
	1-923, gnl\|Mm7\|chr4 (108192554-108191653)

	fco (1.10046)
	pro (0.512033)
	sme (0.305437)
	sug (0.254582)
	tes (0.207814)
	sag (0.182715)
	tbr (0.154178)
	isp (0.150376)
	spl (0.143184)
	csk (0.140746)
	thg (0.126791)
	med (0.116252)
	jca (0.11396)
	cty (0.10408)