Non-Coding RNA Search

Ss1.1-rtes20_p11.5

Sequence:


               
               GCGGTATGTCTCCAACATCTTTCGCTATGACGAGCGCAAGGAGGCCTGGTGCCTCGCAGG
GAAGATGAGCATCCCTATGGACGGCACAGCCGTGATCACCAAGGGTGACCGGAACCTGTA
CATTGTCACTGGGCGGTGCCTGGTGAAGGGCTACATCTCCCGGGTTGGGGTGGTGGACTG
CTTCGACACCAACACTGGGGACGTGGTCCAGTGTATCACCTTCCCCATCGAGTTCAACCA
CCGGCCCCTGCTCTCTTTTCATCAGGACAACATCCTCTGTGTGTACAGCCACCGGCAGAG
TGTGGAGATCAACCTGCAGAAGATAAAGGCCAACAAGACGACCACCTCGGTGCCTCTCTT
GCCCAACAACTGCCCCTTGGATGTGTCCCATGCGATCTGCTCCATTGGAGACAGCAAGGT
GTTTGTGTGTGGAGGCGTCACCACAGCCAGCGATGTCCAGACAAAGGACTACACTATCAA
TCCAAACGCCTACCTGCTGGACCAAAAGACAGGCGAGTGGAAGACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTATGTCTCCAACATCTTTCGCTATGACGAGCGCAAGGAGGCCTGGTGCCTCGCAGG
GAAGATGAGCATCCCTATGGACGGCACAGCCGTGATCACCAAGGGTGACCGGAACCTGTA
CATTGTCACTGGGCGGTGCCTGGTGAAGGGCTACATCTCCCGGGTTGGGGTGGTGGACTG
CTTCGACACCAACACTGGGGACGTGGTCCAGTGTATCACCTTCCCCATCGAGTTCAACCA
CCGGCCCCTGCTCTCTTTTCATCAGGACAACATCCTCTGTGTGTACAGCCACCGGCAGAG
TGTGGAGATCAACCTGCAGAAGATAAAGGCCAACAAGACGACCACCTCGGTGCCTCTCTT
GCCCAACAACTGCCCCTTGGATGTGTCCCATGCGATCTGCTCCATTGGAGACAGCAAGGT
GTTTGTGTGTGGAGGCGTCACCACAGCCAGCGATGTCCAGACAAAGGACTACACTATCAA
TCCAAACGCCTACCTGCTGGACCAAAAGACAGGCGAGTGGAAGACCCT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               120-239, - strand, RNAz p=0.683522
               

               
               400-519, - strand, RNAz p=0.661279
               

               
               411-528, - strand, RNAz p=0.987482

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.683522
               

               
               400-519, - strand, RNAz p=0.661279
               

               
               411-528, - strand, RNAz p=0.987482

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-528, gnl|bosTau2|chr8 (31840567-31840040)
               

               
               1-528, gnl|canFam2|chr11 (55668009-55668813)
               

               
               1-528, gnl|dasNov1|scaffold_849 (100694-101498)
               

               
               1-528, gnl|echTel1|scaffold_202306 (2920-2116)
               

               
               1-528, gnl|hg17|chr9 (36160331-36161135)
               

               
               1-528, gnl|Hg17|chr9 (36160660-36161187)
               

               
               1-528, gnl|loxAfr1|scaffold_3350 (105898-105093)
               

               
               1-528, gnl|mm7|chr4 (43998240-43999044)
               

               
               1-528, gnl|Mm7|chr4 (43998569-43999096)
               

               
               1-528, gnl|monDom2|scaffold_19 (8224056-8224860)
               

               
               1-528, gnl|oryCun1|scaffold_208234 (33169-33973)
               

               
               1-528, gnl|panTro1|chr11 (36718404-36719208)
               

               
               1-528, gnl|rheMac2|chr15 (41301917-41301113)
               

               
               1-528, gnl|rn3|chr5 (60446754-60447558)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-528, gnl|bosTau2|chr8 (31840567-31840040)
               

               
               1-528, gnl|canFam2|chr11 (55668009-55668813)
               

               
               1-528, gnl|dasNov1|scaffold_849 (100694-101498)
               

               
               1-528, gnl|echTel1|scaffold_202306 (2920-2116)
               

               
               1-528, gnl|hg17|chr9 (36160331-36161135)
               

               
               1-528, gnl|Hg17|chr9 (36160660-36161187)
               

               
               1-528, gnl|loxAfr1|scaffold_3350 (105898-105093)
               

               
               1-528, gnl|mm7|chr4 (43998240-43999044)
               

               
               1-528, gnl|Mm7|chr4 (43998569-43999096)
               

               
               1-528, gnl|monDom2|scaffold_19 (8224056-8224860)
               

               
               1-528, gnl|oryCun1|scaffold_208234 (33169-33973)
               

               
               1-528, gnl|panTro1|chr11 (36718404-36719208)
               

               
               1-528, gnl|rheMac2|chr15 (41301917-41301113)
               

               
               1-528, gnl|rn3|chr5 (60446754-60447558)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tes (0.623441)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)

	120-239, - strand, RNAz p=0.683522
	400-519, - strand, RNAz p=0.661279
	411-528, - strand, RNAz p=0.987482

	1-528, gnl\|bosTau2\|chr8 (31840567-31840040)
	1-528, gnl\|canFam2\|chr11 (55668009-55668813)
	1-528, gnl\|dasNov1\|scaffold_849 (100694-101498)
	1-528, gnl\|echTel1\|scaffold_202306 (2920-2116)
	1-528, gnl\|hg17\|chr9 (36160331-36161135)
	1-528, gnl\|Hg17\|chr9 (36160660-36161187)
	1-528, gnl\|loxAfr1\|scaffold_3350 (105898-105093)
	1-528, gnl\|mm7\|chr4 (43998240-43999044)
	1-528, gnl\|Mm7\|chr4 (43998569-43999096)
	1-528, gnl\|monDom2\|scaffold_19 (8224056-8224860)
	1-528, gnl\|oryCun1\|scaffold_208234 (33169-33973)
	1-528, gnl\|panTro1\|chr11 (36718404-36719208)
	1-528, gnl\|rheMac2\|chr15 (41301917-41301113)
	1-528, gnl\|rn3\|chr5 (60446754-60447558)