Non-Coding RNA Search

Ss1.1-rtes21_i13.5

Sequence:


               
               GTGAGGTCAAGCGTTGAATAACCACCGCCACCGCCGGAGGATGGCTTCCAGCTTCAAGAA
GCCACAAGTGGCCTCCACCAGCCAGAAAAGAAAGGTGGGCCCTAAGCCTGAACTCACTGA
AGATCAGAAGCAAGAAGTTCGCGAAGCGTTTGACCTCTTCGATGCTGACGGCAGCGGCAC
CATCGACGTGAAGGAGCTGAAGGTGGCTATGCGAGCGCTGGGCTTTGAACCCAGAAAGGA
GGAGATGAAGAGGATGATCTCGGAGGTGGACAAGGAAGGCACAGGGAAAATCAGCTTCAA
TGACTTCCTGGCCGTGATGACGCAGAAGATGGCCGAGAAGGATACCAAAGAGGAAATCCT
GAAGGCTTTCAGGCTCTTTGACGACGATGAAACTGGCAAGATCTCATTCAAAAATCTAAA
ACGCGTGGCCAACGAGTTGGGGGAAAACCTCACGGATGAGGAGCTTCAGGAAATGATTGA
CGAAGCGGACCGGGATGGAGACGGCGAAGTGAACGAGGAAGAATTTCTTCGGATCATGAA
AAAGACCAACCTTTATTAATGTTGGTTTCTCAGGCAAGCACGTGCAGAGTTGAGTCACAC
TTGCCGGGTTCCCTGCTTCTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAGGTCAAGCGTTGAATAACCACCGCCACCGCCGGAGGATGGCTTCCAGCTTCAAGAA
GCCACAAGTGGCCTCCACCAGCCAGAAAAGAAAGGTGGGCCCTAAGCCTGAACTCACTGA
AGATCAGAAGCAAGAAGTTCGCGAAGCGTTTGACCTCTTCGATGCTGACGGCAGCGGCAC
CATCGACGTGAAGGAGCTGAAGGTGGCTATGCGAGCGCTGGGCTTTGAACCCAGAAAGGA
GGAGATGAAGAGGATGATCTCGGAGGTGGACAAGGAAGGCACAGGGAAAATCAGCTTCAA
TGACTTCCTGGCCGTGATGACGCAGAAGATGGCCGAGAAGGATACCAAAGAGGAAATCCT
GAAGGCTTTCAGGCTCTTTGACGACGATGAAACTGGCAAGATCTCATTCAAAAATCTAAA
ACGCGTGGCCAACGAGTTGGGGGAAAACCTCACGGATGAGGAGCTTCAGGAAATGATTGA
CGAAGCGGACCGGGATGGAGACGGCGAAGTGAACGAGGAAGAATTTCTTCGGATCATGAA
AAAGACCAACCTTTATTAATGTTGGTTTCTCAGGCAAGCACGTGCAGAGTTGAGTCACAC
TTGCCGGGTTCCCTGCTTCTGTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61820697|ref|XP_590442.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61820697|ref|XP_590442.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-476, + strand, RNAz p=0.919407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-476, + strand, RNAz p=0.919407

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-620, gnl|bosTau2|chr24 (25919279-25919898)
               

               
               1-620, gnl|Hg17|chr18 (570370-570970)
               

               
               1-620, gnl|Mm7|chr18 (9825999-9825428)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-620, gnl|bosTau2|chr24 (25919279-25919898)
               

               
               1-620, gnl|Hg17|chr18 (570370-570970)
               

               
               1-620, gnl|Mm7|chr18 (9825999-9825428)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.623441)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)

	1-620, gnl\|bosTau2\|chr24 (25919279-25919898)
	1-620, gnl\|Hg17\|chr18 (570370-570970)
	1-620, gnl\|Mm7\|chr18 (9825999-9825428)