Non-Coding RNA Search

Ss1.1-rtes21_i17.5

Sequence:


               
               GCGGAATTACTCACTGACTGTGCCCTACCCTGAATTCGACGCATACTCTCTGAATAATGA
CCTGATGATGATAAAACTGTCTAAGGCTGCCGGACTCAATAGCCACGTGGGAACCATAGC
CATAGCTTTGGAACCCTTATCCTTTAACGATTCCTGCTTTATCCCAACCTGGACCTGGAG
TAAATATAAAAACCTTACTGAACCTGACATCCTGACTTGGATAAACCAGTATAAGCTTCC
CTTTGATGACTGCCAGAATATGCAAGACGAAAGAATGGCAATAAACATCATGTGTGTGGG
ACGGCCTCTAAAGACACTAGCTGAAAATAAGGAAGTTTCAGCAGCTCCAGCCATCTGCGA
TGGGAGGGTGCATGGAATCTTGTCCTGGGCAAAAGGAAGTGTCACTCTAGGAAGTGAGGG
ATTCTTCACAGAAGTTAATCCTTATGCAAGATGGATCATGAAAATCATTGAGACCTACTA
AGGCTCCTCTGTCCCTCCACCACCCAGTGTATTTCTTCATGATTTCATTACTGGATCCAC
AACTCTCTTCATCTTTACTTGTCTTGAACAGAATCCATTAAAAAAAAAAAAAAGACACTA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGAATTACTCACTGACTGTGCCCTACCCTGAATTCGACGCATACTCTCTGAATAATGA
CCTGATGATGATAAAACTGTCTAAGGCTGCCGGACTCAATAGCCACGTGGGAACCATAGC
CATAGCTTTGGAACCCTTATCCTTTAACGATTCCTGCTTTATCCCAACCTGGACCTGGAG
TAAATATAAAAACCTTACTGAACCTGACATCCTGACTTGGATAAACCAGTATAAGCTTCC
CTTTGATGACTGCCAGAATATGCAAGACGAAAGAATGGCAATAAACATCATGTGTGTGGG
ACGGCCTCTAAAGACACTAGCTGAAAATAAGGAAGTTTCAGCAGCTCCAGCCATCTGCGA
TGGGAGGGTGCATGGAATCTTGTCCTGGGCAAAAGGAAGTGTCACTCTAGGAAGTGAGGG
ATTCTTCACAGAAGTTAATCCTTATGCAAGATGGATCATGAAAATCATTGAGACCTACTA
AGGCTCCTCTGTCCCTCCACCACCCAGTGTATTTCTTCATGATTTCATTACTGGATCCAC
AACTCTCTTCATCTTTACTTGTCTTGAACAGAATCCATTAAAAAAAAAAAAAAGACACTA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38174150|gb|AAH61035.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38174150|gb|AAH61035.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-197, gnl|bosTau2|chr4 (58008854-58009047)
               

               
               4-197, gnl|Hg17|chr7 (141422842-141422649)
               

               
               4-197, gnl|Mm7|chr6 (40856192-40855999)
               


               
               330-588, gnl|bosTau2|chr4 (58011474-58011737)
               

               
               330-588, gnl|Hg17|chr7 (141419002-141418726)
               

               
               330-588, gnl|Mm7|chr6 (40851168-40850916)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-197, gnl|bosTau2|chr4 (58008854-58009047)
               

               
               4-197, gnl|Hg17|chr7 (141422842-141422649)
               

               
               4-197, gnl|Mm7|chr6 (40856192-40855999)
               


               
               330-588, gnl|bosTau2|chr4 (58011474-58011737)
               

               
               330-588, gnl|Hg17|chr7 (141419002-141418726)
               

               
               330-588, gnl|Mm7|chr6 (40851168-40850916)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.58548)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.207814)

	4-197, gnl\|bosTau2\|chr4 (58008854-58009047)
	4-197, gnl\|Hg17\|chr7 (141422842-141422649)
	4-197, gnl\|Mm7\|chr6 (40856192-40855999)

	330-588, gnl\|bosTau2\|chr4 (58011474-58011737)
	330-588, gnl\|Hg17\|chr7 (141419002-141418726)
	330-588, gnl\|Mm7\|chr6 (40851168-40850916)