Non-Coding RNA Search

Ss1.1-rtes21_i21.5

Sequence:


               
               GGCAGGGACTCCAGCAGGTTGCTTGGAACAGAAGAGGATCAGGAGGAAACTGCGTTTGTG
AAGGAGGAGACATTTGCATCCACACAGTTACCTGGCATAGCAGAAGGGCTGGTTCCTGTT
TTCCTCCAGCGAGTGAGATAAACACAAATCTGCAAGCAATATACCTGATCCAGAACGCCG
AAGACCCCCTGGGTCCGTCTGGTCATCCCAGTTGAAGGTTCACTTCCTTCCAGCCATGGG
GCTCTTCATTCTGCTCTCCTTGACTGTCGTTTCAGATGCCATGGTCATGGATGAGAAAGT
CAAGGAAAGCTTTGTGCTGGACACAGCTTCCGCCATCTGCCACTACGATGCCCACTATAA
GGACCACCGCAAATACTGGTGCCGAGGCTATTTCCGAGACTATTGCAACATCCTCGCCTT
CACACCCAATAGCACTGACCGGGTGGTCCTGCAGGACACAGGAAACCAGCTCATTATCAC
CGTGTCCTGTCTGACCAAGGAGGACACAGGCTGGTACTGGTGTGGCATCCAGAGGGACTT
CGCCAGGGATGACATGGATTTCACCGAGCTGGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGGGACTCCAGCAGGTTGCTTGGAACAGAAGAGGATCAGGAGGAAACTGCGTTTGTG
AAGGAGGAGACATTTGCATCCACACAGTTACCTGGCATAGCAGAAGGGCTGGTTCCTGTT
TTCCTCCAGCGAGTGAGATAAACACAAATCTGCAAGCAATATACCTGATCCAGAACGCCG
AAGACCCCCTGGGTCCGTCTGGTCATCCCAGTTGAAGGTTCACTTCCTTCCAGCCATGGG
GCTCTTCATTCTGCTCTCCTTGACTGTCGTTTCAGATGCCATGGTCATGGATGAGAAAGT
CAAGGAAAGCTTTGTGCTGGACACAGCTTCCGCCATCTGCCACTACGATGCCCACTATAA
GGACCACCGCAAATACTGGTGCCGAGGCTATTTCCGAGACTATTGCAACATCCTCGCCTT
CACACCCAATAGCACTGACCGGGTGGTCCTGCAGGACACAGGAAACCAGCTCATTATCAC
CGTGTCCTGTCTGACCAAGGAGGACACAGGCTGGTACTGGTGTGGCATCCAGAGGGACTT
CGCCAGGGATGACATGGATTTCACCGAGCTGGTTGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55959354|emb|CAI15626.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55959354|emb|CAI15626.1|

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               273-441, gnl|bosTau2|chr3 (27728986-27729154)
               

               
               273-441, gnl|canFam2|chr17 (66984065-66983801)
               

               
               273-441, gnl|dasNov1|scaffold_19704 (6381-6152)
               

               
               273-441, gnl|echTel1|scaffold_299433 (3068-2847)
               

               
               273-441, gnl|hg17|chr1 (111743519-111743755)
               

               
               273-441, gnl|Hg17|chr1 (111743691-111743523)
               

               
               273-441, gnl|loxAfr1|scaffold_6961 (81196-81445)
               

               
               273-441, gnl|mm7|chr3 (105735216-105734951)
               

               
               273-441, gnl|Mm7|chr3 (105735042-105735210)
               

               
               273-441, gnl|monDom2|scaffold_0 (4330345-4330100)
               

               
               273-441, gnl|oryCun1|scaffold_199540 (13413-13179)
               

               
               273-441, gnl|panTro1|chr1 (110523671-110523429)
               

               
               273-441, gnl|rheMac2|chr1 (114489494-114489730)
               

               
               273-441, gnl|rn3|chr2 (201135299-201135044)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               273-441, gnl|bosTau2|chr3 (27728986-27729154)
               

               
               273-441, gnl|canFam2|chr17 (66984065-66983801)
               

               
               273-441, gnl|dasNov1|scaffold_19704 (6381-6152)
               

               
               273-441, gnl|echTel1|scaffold_299433 (3068-2847)
               

               
               273-441, gnl|hg17|chr1 (111743519-111743755)
               

               
               273-441, gnl|Hg17|chr1 (111743691-111743523)
               

               
               273-441, gnl|loxAfr1|scaffold_6961 (81196-81445)
               

               
               273-441, gnl|mm7|chr3 (105735216-105734951)
               

               
               273-441, gnl|Mm7|chr3 (105735042-105735210)
               

               
               273-441, gnl|monDom2|scaffold_0 (4330345-4330100)
               

               
               273-441, gnl|oryCun1|scaffold_199540 (13413-13179)
               

               
               273-441, gnl|panTro1|chr1 (110523671-110523429)
               

               
               273-441, gnl|rheMac2|chr1 (114489494-114489730)
               

               
               273-441, gnl|rn3|chr2 (201135299-201135044)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.207814)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	273-441, gnl\|bosTau2\|chr3 (27728986-27729154)
	273-441, gnl\|canFam2\|chr17 (66984065-66983801)
	273-441, gnl\|dasNov1\|scaffold_19704 (6381-6152)
	273-441, gnl\|echTel1\|scaffold_299433 (3068-2847)
	273-441, gnl\|hg17\|chr1 (111743519-111743755)
	273-441, gnl\|Hg17\|chr1 (111743691-111743523)
	273-441, gnl\|loxAfr1\|scaffold_6961 (81196-81445)
	273-441, gnl\|mm7\|chr3 (105735216-105734951)
	273-441, gnl\|Mm7\|chr3 (105735042-105735210)
	273-441, gnl\|monDom2\|scaffold_0 (4330345-4330100)
	273-441, gnl\|oryCun1\|scaffold_199540 (13413-13179)
	273-441, gnl\|panTro1\|chr1 (110523671-110523429)
	273-441, gnl\|rheMac2\|chr1 (114489494-114489730)
	273-441, gnl\|rn3\|chr2 (201135299-201135044)