Non-Coding RNA Search

Ss1.1-rtes22_b19.5

Sequence:


               
               CTGAAGCAACTGCTCTACCAAGCCACAGAGGAGGTGGCTGAGCTGAGAGCCCGGGAGGCG
GCCAGTCTAAGGCAGCATGAGAAAACTCGGGGCTCGCTTGTGGCCCAGGCCCAGGCCTGG
GGCCAGGAGCTAAAGGCTCTGCTGGAAAAGTACAACACGGCGTGCCGGGAAATGAGTCGG
CTGCGGGAGGCAGTGGCGGAGGAGCGCCGCAGGAGTGGGGACCTGGCCGCACGCGTCGCG
GAGCAGGAACGCCAAGCCAGCGAGATGCGCGGGCGTTCCGAGCAGTTTGAGAAAACCGCG
GAGCTGCTGAAAGAGAAGGTGGAGCATCTAATCGGGGCTTGCCGGGACAAGGAGGCCAAG
ATCAAGGAATTGTTGAAGAAACTGGAGCAACTTTCAGAGGATGTTCTAGCAGTTCGGGGA
AAAAATGCTCGCCTTGCCCTACAGCTGCAGGATTCCCAGAAGAACCATGAAGAGATCATC
GCCACCTATAGGAACCATCTGCTGAGTGCTGCTCAGGGCTACATGGAACAGGATGTGTAC
AATATCCTACTGAGAATCCTCAGCATACAGGAGGAGTGAGGCAGCCTGGGGCCTGAAGAA
CATGGGATCTCTCTGTTGGGACTAGCACATCCCTGGTTGCCAGAGGCTCCATCAGGTGGT
TGTGGGTGATGGGTGGTGGGTTGGTCACTAGGGGAGGTATGGGTGGGGCTTCACCTGATG
TTATGGACCCCAGACCTGAGAACCTGAACCTTGGAATCAGCATGGGATGAGACCAGAAGA
GGTGTGGATGGAAGCCAGCTCTATGGAAAATAAAGCAGGAGGCAGGAAAAAAAAAAAAAA
AAAAAAAAAAAATTTCTAAAGGGGCATGGGGGAAGGAATCTTTTTCCTTCTTTTTTGATT
ACAAATGGCCCCATAAGTTAGCTGCTTTCAAACTTTGATTATGATCCATATTAATAAATA
CATTTTACATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAAGCAACTGCTCTACCAAGCCACAGAGGAGGTGGCTGAGCTGAGAGCCCGGGAGGCG
GCCAGTCTAAGGCAGCATGAGAAAACTCGGGGCTCGCTTGTGGCCCAGGCCCAGGCCTGG
GGCCAGGAGCTAAAGGCTCTGCTGGAAAAGTACAACACGGCGTGCCGGGAAATGAGTCGG
CTGCGGGAGGCAGTGGCGGAGGAGCGCCGCAGGAGTGGGGACCTGGCCGCACGCGTCGCG
GAGCAGGAACGCCAAGCCAGCGAGATGCGCGGGCGTTCCGAGCAGTTTGAGAAAACCGCG
GAGCTGCTGAAAGAGAAGGTGGAGCATCTAATCGGGGCTTGCCGGGACAAGGAGGCCAAG
ATCAAGGAATTGTTGAAGAAACTGGAGCAACTTTCAGAGGATGTTCTAGCAGTTCGGGGA
AAAAATGCTCGCCTTGCCCTACAGCTGCAGGATTCCCAGAAGAACCATGAAGAGATCATC
GCCACCTATAGGAACCATCTGCTGAGTGCTGCTCAGGGCTACATGGAACAGGATGTGTAC
AATATCCTACTGAGAATCCTCAGCATACAGGAGGAGTGAGGCAGCCTGGGGCCTGAAGAA
CATGGGATCTCTCTGTTGGGACTAGCACATCCCTGGTTGCCAGAGGCTCCATCAGGTGGT
TGTGGGTGATGGGTGGTGGGTTGGTCACTAGGGGAGGTATGGGTGGGGCTTCACCTGATG
TTATGGACCCCAGACCTGAGAACCTGAACCTTGGAATCAGCATGGGATGAGACCAGAAGA
GGTGTGGATGGAAGCCAGCTCTATGGAAAATAAAGCAGGAGGCAGGAAAAAAAAAAAAAA
AAAAAAAAAAAATTTCTAAAGGGGCATGGGGGAAGGAATCTTTTTCCTTCTTTTTTGATT
ACAAATGGCCCCATAAGTTAGCTGCTTTCAAACTTTGATTATGATCCATATTAATAAATA
CATTTTACATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16553818|dbj|BAB71597.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16553818|dbj|BAB71597.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-319, + strand, RNAz p=0.982421
               

               
               775-894, - strand, RNAz p=0.99621

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-319, + strand, RNAz p=0.982421
               

               
               775-894, - strand, RNAz p=0.99621

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-360, gnl|bosTau2|chr3 (15474635-15474994)
               

               
               1-360, gnl|Hg17|chr1 (143051784-143052143)
               

               
               1-360, gnl|Mm7|chr3 (96558765-96559124)
               


               
               618-907, gnl|bosTau2|chr3 (15478979-15479254)
               

               
               618-907, gnl|canFam2|chr17 (61746099-61745679)
               

               
               618-907, gnl|dasNov1|scaffold_124910 (40741-41140)
               

               
               618-907, gnl|echTel1|scaffold_294470 (606-217)
               

               
               618-907, gnl|hg17|chr1 (143057229-143057669)
               

               
               618-907, gnl|Hg17|chr1 (143057364-143057632)
               

               
               618-907, gnl|loxAfr1|scaffold_4816 (414-812)
               

               
               618-907, gnl|mm7|chr3 (96564664-96565026)
               

               
               618-907, gnl|Mm7|chr3 (96564788-96565037)
               

               
               618-907, gnl|monDom2|scaffold_44 (2314894-2314452)
               

               
               618-907, gnl|oryCun1|scaffold_210558 (43985-44337)
               

               
               618-907, gnl|panTro1|chr1_random (17546457-17546016)
               

               
               618-907, gnl|rheMac2|chr1 (126074807-126074370)
               

               
               618-907, gnl|rn3|chr2 (191455291-191455649)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-360, gnl|bosTau2|chr3 (15474635-15474994)
               

               
               1-360, gnl|Hg17|chr1 (143051784-143052143)
               

               
               1-360, gnl|Mm7|chr3 (96558765-96559124)
               


               
               618-907, gnl|bosTau2|chr3 (15478979-15479254)
               

               
               618-907, gnl|canFam2|chr17 (61746099-61745679)
               

               
               618-907, gnl|dasNov1|scaffold_124910 (40741-41140)
               

               
               618-907, gnl|echTel1|scaffold_294470 (606-217)
               

               
               618-907, gnl|hg17|chr1 (143057229-143057669)
               

               
               618-907, gnl|Hg17|chr1 (143057364-143057632)
               

               
               618-907, gnl|loxAfr1|scaffold_4816 (414-812)
               

               
               618-907, gnl|mm7|chr3 (96564664-96565026)
               

               
               618-907, gnl|Mm7|chr3 (96564788-96565037)
               

               
               618-907, gnl|monDom2|scaffold_44 (2314894-2314452)
               

               
               618-907, gnl|oryCun1|scaffold_210558 (43985-44337)
               

               
               618-907, gnl|panTro1|chr1_random (17546457-17546016)
               

               
               618-907, gnl|rheMac2|chr1 (126074807-126074370)
               

               
               618-907, gnl|rn3|chr2 (191455291-191455649)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cte (2.34192)
               

               
               tes (1.03907)
               

               
               amn (0.417711)
               

               
               cut (0.169924)
               

               
               nbm (0.0993246)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (2.34192)
               

               
               tes (1.03907)
               

               
               amn (0.417711)
               

               
               cut (0.169924)
               

               
               nbm (0.0993246)

	1-319, + strand, RNAz p=0.982421
	775-894, - strand, RNAz p=0.99621

	1-360, gnl\|bosTau2\|chr3 (15474635-15474994)
	1-360, gnl\|Hg17\|chr1 (143051784-143052143)
	1-360, gnl\|Mm7\|chr3 (96558765-96559124)

	618-907, gnl\|bosTau2\|chr3 (15478979-15479254)
	618-907, gnl\|canFam2\|chr17 (61746099-61745679)
	618-907, gnl\|dasNov1\|scaffold_124910 (40741-41140)
	618-907, gnl\|echTel1\|scaffold_294470 (606-217)
	618-907, gnl\|hg17\|chr1 (143057229-143057669)
	618-907, gnl\|Hg17\|chr1 (143057364-143057632)
	618-907, gnl\|loxAfr1\|scaffold_4816 (414-812)
	618-907, gnl\|mm7\|chr3 (96564664-96565026)
	618-907, gnl\|Mm7\|chr3 (96564788-96565037)
	618-907, gnl\|monDom2\|scaffold_44 (2314894-2314452)
	618-907, gnl\|oryCun1\|scaffold_210558 (43985-44337)
	618-907, gnl\|panTro1\|chr1_random (17546457-17546016)
	618-907, gnl\|rheMac2\|chr1 (126074807-126074370)
	618-907, gnl\|rn3\|chr2 (191455291-191455649)

	cte (2.34192)
	tes (1.03907)
	amn (0.417711)
	cut (0.169924)
	nbm (0.0993246)