Non-Coding RNA Search

Ss1.1-rtes22_i23.5

Sequence:


               
               CTTCTGCCAGGCCCGTGCCACCAAAGTTTGAGCTGCTAGGACTTTGTTTTCCCACAGCGC
ATGCTCTATTACTATTTTTTAACTGTTAGGAACTTGGTGTGCCTGTCACTGTGCTGTACA
TAAGCTTTGGCAGACTTCCTGCTTCCTCCTCTGCTTTACCCCTCATCCTCCAAAATATGG
TTTTTAAAAAATTTTTTTTAATGATTATTAAATAGAAGATGCAAGAAAATGTTTATAAAA
TAAAGAGAAACAGCACCCTCTTCAGCCCCATTTAGGAAGCGGGTACCATTTCCTTTGAAG
CCCCTGCCGTGCCTCCCTGGTAGAGGAAACACTGAGCTGGCTTTGCTTTGTGATTTTATT
ACATATGTTTGTATGGGTTTTGCATGTTCTGAATTTTATATAAGTGGAGCCATACCCTGT
TTATTCTCCTGTGATTTGCTTTTTCAGTCAATATGACGTTTCTGAGATTTCTCCAAATCA
ATGTGTGTGGCTGCAGGGCATTCCTTTTTCTTGCTGTATAGTGACCCATCAAAGATACCA
CTATGGGTTTTTCTATTTTGTCCCACTGATCATTTTATCTACCCGTGTGTGATCCCCCAC
GTTCTGTTCTTGGCCCTTGCTCTTCTGTATAAAGTTTAGAATTAGCTTGTAAAGCTCTAC
CAATAAAACCCCTTCGAAATTGTGAATGGAGCCCAACCTAATCTATAGATCAGTCTGGGG
AAAATCAGCATCTACACGAAATTGAATTTTCCAGTTCATGAGCATGGTGAATCTCTTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGCCAGGCCCGTGCCACCAAAGTTTGAGCTGCTAGGACTTTGTTTTCCCACAGCGC
ATGCTCTATTACTATTTTTTAACTGTTAGGAACTTGGTGTGCCTGTCACTGTGCTGTACA
TAAGCTTTGGCAGACTTCCTGCTTCCTCCTCTGCTTTACCCCTCATCCTCCAAAATATGG
TTTTTAAAAAATTTTTTTTAATGATTATTAAATAGAAGATGCAAGAAAATGTTTATAAAA
TAAAGAGAAACAGCACCCTCTTCAGCCCCATTTAGGAAGCGGGTACCATTTCCTTTGAAG
CCCCTGCCGTGCCTCCCTGGTAGAGGAAACACTGAGCTGGCTTTGCTTTGTGATTTTATT
ACATATGTTTGTATGGGTTTTGCATGTTCTGAATTTTATATAAGTGGAGCCATACCCTGT
TTATTCTCCTGTGATTTGCTTTTTCAGTCAATATGACGTTTCTGAGATTTCTCCAAATCA
ATGTGTGTGGCTGCAGGGCATTCCTTTTTCTTGCTGTATAGTGACCCATCAAAGATACCA
CTATGGGTTTTTCTATTTTGTCCCACTGATCATTTTATCTACCCGTGTGTGATCCCCCAC
GTTCTGTTCTTGGCCCTTGCTCTTCTGTATAAAGTTTAGAATTAGCTTGTAAAGCTCTAC
CAATAAAACCCCTTCGAAATTGTGAATGGAGCCCAACCTAATCTATAGATCAGTCTGGGG
AAAATCAGCATCTACACGAAATTGAATTTTCCAGTTCATGAGCATGGTGAATCTCTTCAT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               11-306, gnl|bosTau2|chr29 (36995606-36995888)
               


               
               343-780, gnl|bosTau2|chr29 (36995984-36996407)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-306, gnl|bosTau2|chr29 (36995606-36995888)
               


               
               343-780, gnl|bosTau2|chr29 (36995984-36996407)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               tes (0.207814)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fco (0.157208)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               bla (0.124347)

	11-306, gnl\|bosTau2\|chr29 (36995606-36995888)

	343-780, gnl\|bosTau2\|chr29 (36995984-36996407)

	tes (0.207814)
	ill (0.175593)
	ton (0.1755)
	fco (0.157208)
	lyg (0.133103)
	ese (0.126502)
	bla (0.124347)