Ss1.1-rtes22_n13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGATGATTGAGCCAAATGAAGCAATGTCAGGAGAAGAGTTTGGCTTGGGTTTGATTGGA TTGTTGTTTGGAGTCGGGGAAAGGAGGCACAGGAAGAAAGTCTCCTCAAAAAATATTAAA AATAAAGTCTCTTTAAAGAATAGTGAGAAGAGAGTGTCTTCAAAGAATACTGAAAATACA GAAACAAATCTACAGTCTAAGCTACAGTTACCTTCCTTCTTAAAAGAAGACACAGGTGAA ATGAGCAAAAATGTAGTCATTGCAGAGCAAGAGAAAAAAAATGAATATTGCCTTGAGGAT ACTGATGACAAGTTGTCTGACTCAACAGACGATGATACCAATGATGAAGATAATGAGGAA GACAGTAACCCTAGTAAGGGCATTCATGCCCCGTTAGAGTTAATGACAGAATTCCTGAGA GCAGAAATGGGCCAAGACTATCATTTGGCAAAAAAGTTATGCCAGATGATCCTAATCTAT GAACCAGAAAATCCTGAGGCCAAGGAGTTTTTGTCACTTATTGAAGAAATGTTGCTGATG GAGAAAGCTCAAAACCTTGAGGAAGATGATGAAGAGAGTGAAGAAGACAGCAGCAGTGAG AGTGAAGGGGAAAACAGTGAGGACTCAAGTGGGGAAAGCTCTGATGACTGTGAAGATGGG TGATGACAGTTCTACTATAGTTTAATCTCCATGTATTTTCATTGCTGTATACTATGGAAA TATAAATAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGATGATTGAGCCAAATGAAGCAATGTCAGGAGAAGAGTTTGGCTTGGGTTTGATTGGA TTGTTGTTTGGAGTCGGGGAAAGGAGGCACAGGAAGAAAGTCTCCTCAAAAAATATTAAA AATAAAGTCTCTTTAAAGAATAGTGAGAAGAGAGTGTCTTCAAAGAATACTGAAAATACA GAAACAAATCTACAGTCTAAGCTACAGTTACCTTCCTTCTTAAAAGAAGACACAGGTGAA ATGAGCAAAAATGTAGTCATTGCAGAGCAAGAGAAAAAAAATGAATATTGCCTTGAGGAT ACTGATGACAAGTTGTCTGACTCAACAGACGATGATACCAATGATGAAGATAATGAGGAA GACAGTAACCCTAGTAAGGGCATTCATGCCCCGTTAGAGTTAATGACAGAATTCCTGAGA GCAGAAATGGGCCAAGACTATCATTTGGCAAAAAAGTTATGCCAGATGATCCTAATCTAT GAACCAGAAAATCCTGAGGCCAAGGAGTTTTTGTCACTTATTGAAGAAATGTTGCTGATG GAGAAAGCTCAAAACCTTGAGGAAGATGATGAAGAGAGTGAAGAAGACAGCAGCAGTGAG AGTGAAGGGGAAAACAGTGAGGACTCAAGTGGGGAAAGCTCTGATGACTGTGAAGATGGG TGATGACAGTTCTACTATAGTTTAATCTCCATGTATTTTCATTGCTGTATACTATGGAAA TATAAATAAGAG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 234-340, - strand, RNAz p=0.758651 | |
| 305-411, - strand, RNAz p=0.741618 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 234-340, - strand, RNAz p=0.758651 | |
| 305-411, - strand, RNAz p=0.741618 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 234-411, gnl|bosTau2|chr2 (16500036-16499850) | |
| 234-411, gnl|canFam2|chr36 (18328721-18328891) | |
| 234-411, gnl|dasNov1|scaffold_71916 (4185-4013) | |
| 234-411, gnl|echTel1|scaffold_315391 (80483-80308) | |
| 234-411, gnl|hg17|chr2 (171466638-171466816) | |
| 234-411, gnl|Hg17|chr2 (171466661-171466850) | |
| 234-411, gnl|loxAfr1|scaffold_84501 (25241-25068) | |
| 234-411, gnl|oryCun1|scaffold_191597 (897-1064) | |
| 234-411, gnl|panTro1|chr13 (61086738-61086916) | |
| 234-411, gnl|rheMac2|chr12 (34466496-34466673) | |
| 234-411, gnl|rn3|chr3 (52653641-52653808) | |
| 541-732, gnl|bosTau2|chr2 (16488841-16488652) | |
| 541-732, gnl|canFam2|chr36 (18351375-18351928) | |
| 541-732, gnl|dasNov1|scaffold_9849 (4566-5100) | |
| 541-732, gnl|echTel1|scaffold_315391 (56433-55830) | |
| 541-732, gnl|hg17|chr2 (171480537-171481081) | |
| 541-732, gnl|Hg17|chr2 (171480786-171480978) | |
| 541-732, gnl|loxAfr1|scaffold_1781 (63871-63292) | |
| 541-732, gnl|monDom2|scaffold_2 (69436198-69436883) | |
| 541-732, gnl|panTro1|chr13 (61100771-61101317) | |
| 541-732, gnl|rheMac2|chr12 (34479725-34480267) | |
| 541-732, gnl|rn3|chr3 (52662774-52663310) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 234-411, gnl|bosTau2|chr2 (16500036-16499850) | |
| 234-411, gnl|canFam2|chr36 (18328721-18328891) | |
| 234-411, gnl|dasNov1|scaffold_71916 (4185-4013) | |
| 234-411, gnl|echTel1|scaffold_315391 (80483-80308) | |
| 234-411, gnl|hg17|chr2 (171466638-171466816) | |
| 234-411, gnl|Hg17|chr2 (171466661-171466850) | |
| 234-411, gnl|loxAfr1|scaffold_84501 (25241-25068) | |
| 234-411, gnl|oryCun1|scaffold_191597 (897-1064) | |
| 234-411, gnl|panTro1|chr13 (61086738-61086916) | |
| 234-411, gnl|rheMac2|chr12 (34466496-34466673) | |
| 234-411, gnl|rn3|chr3 (52653641-52653808) | |
| 541-732, gnl|bosTau2|chr2 (16488841-16488652) | |
| 541-732, gnl|canFam2|chr36 (18351375-18351928) | |
| 541-732, gnl|dasNov1|scaffold_9849 (4566-5100) | |
| 541-732, gnl|echTel1|scaffold_315391 (56433-55830) | |
| 541-732, gnl|hg17|chr2 (171480537-171481081) | |
| 541-732, gnl|Hg17|chr2 (171480786-171480978) | |
| 541-732, gnl|loxAfr1|scaffold_1781 (63871-63292) | |
| 541-732, gnl|monDom2|scaffold_2 (69436198-69436883) | |
| 541-732, gnl|panTro1|chr13 (61100771-61101317) | |
| 541-732, gnl|rheMac2|chr12 (34479725-34480267) | |
| 541-732, gnl|rn3|chr3 (52662774-52663310) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cte (4.09836) | |
| tes (1.03907) | |
| clu (0.358938) | |
| eye (0.170503) | |
| lyg (0.133103) | |
| tra (0.123092) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (4.09836) | |
| tes (1.03907) | |
| clu (0.358938) | |
| eye (0.170503) | |
| lyg (0.133103) | |
| tra (0.123092) |