Non-Coding RNA Search

Ss1.1-rtes22_o1.5

Sequence:


               
               GCCGACCACTTCCACAGAAGCCTCAGCCCCCTCCAGCTGGGCAGTCCAACCAAGAAGGGC
CAAGTCAAGCTCAGCTCGTGTCTTGCCCAAATTGTAGCCGGACCTTTGCCCCTGACCGCC
TTCTGGTGCACCAGAGAAGTTGTAGAGCTCAACCTAGTGGCCCAAAAGTTCAGGATTTGA
CCTCAGAGAGTAAAGGTGGTCTAAAAGGGTCCCCTAAATCCAAACAGCAAAGGAACATGG
CAGCACCCTCTGTGATTGATAAGGTAATTCATGCCACAGGAGATGCGTGGGATGGGCCTG
GGAGTACATTTTAACTTCCCGGAGAATAAGAGAAAACTGTCCCCAGAATCAGCTGCCTCG
ACTCCTAGGATGGTTTCTTTCAATGTCTTGTTTCTGCCTCAATGCAGCCTTTTCAAATGG
ATCCCTTGTCAGACACCAGGGGCTATATTTCTGTTGGCAAATTAGATGTAAAAACATCCT
CGCCTGGTGTATTCGTAGTCCTCTTCCATCCTGCTGCCTAAAAGAGAGATGGACTTCTTT
CCTCTCTGATCCCTCATACCAATAATCCTTGGGAGAGACTGTTATTTGAAAATGAGTCAG
TAATGCTGTGTCTACATTACCGAGATATAGTTCCCATTCCAACAGCCAATATTTATTACC
GGTTTATTTTAGTCATCTACCTTAGGAATTCATTTTTGGCAATGCTGAGTTATGCTGAGT
TTATGTTACTAAAATAGAATCTGTGTCAAAAACCCCAAATGACTTTAGCAGTAATTAAAC
ACTGGAGCACTTGCAGAAATAAACATGCTCTAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGACCACTTCCACAGAAGCCTCAGCCCCCTCCAGCTGGGCAGTCCAACCAAGAAGGGC
CAAGTCAAGCTCAGCTCGTGTCTTGCCCAAATTGTAGCCGGACCTTTGCCCCTGACCGCC
TTCTGGTGCACCAGAGAAGTTGTAGAGCTCAACCTAGTGGCCCAAAAGTTCAGGATTTGA
CCTCAGAGAGTAAAGGTGGTCTAAAAGGGTCCCCTAAATCCAAACAGCAAAGGAACATGG
CAGCACCCTCTGTGATTGATAAGGTAATTCATGCCACAGGAGATGCGTGGGATGGGCCTG
GGAGTACATTTTAACTTCCCGGAGAATAAGAGAAAACTGTCCCCAGAATCAGCTGCCTCG
ACTCCTAGGATGGTTTCTTTCAATGTCTTGTTTCTGCCTCAATGCAGCCTTTTCAAATGG
ATCCCTTGTCAGACACCAGGGGCTATATTTCTGTTGGCAAATTAGATGTAAAAACATCCT
CGCCTGGTGTATTCGTAGTCCTCTTCCATCCTGCTGCCTAAAAGAGAGATGGACTTCTTT
CCTCTCTGATCCCTCATACCAATAATCCTTGGGAGAGACTGTTATTTGAAAATGAGTCAG
TAATGCTGTGTCTACATTACCGAGATATAGTTCCCATTCCAACAGCCAATATTTATTACC
GGTTTATTTTAGTCATCTACCTTAGGAATTCATTTTTGGCAATGCTGAGTTATGCTGAGT
TTATGTTACTAAAATAGAATCTGTGTCAAAAACCCCAAATGACTTTAGCAGTAATTAAAC
ACTGGAGCACTTGCAGAAATAAACATGCTCTAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D985_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D985_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-814, gnl|bosTau2|chr13 (60989252-60990059)
               

               
               1-814, gnl|Hg17|chr5 (121516360-121517177)
               

               
               1-814, gnl|Mm7|chr18 (53019812-53020617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-814, gnl|bosTau2|chr13 (60989252-60990059)
               

               
               1-814, gnl|Hg17|chr5 (121516360-121517177)
               

               
               1-814, gnl|Mm7|chr18 (53019812-53020617)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.87822)
               

               
               tes (0.623441)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               tes (0.623441)

	1-814, gnl\|bosTau2\|chr13 (60989252-60990059)
	1-814, gnl\|Hg17\|chr5 (121516360-121517177)
	1-814, gnl\|Mm7\|chr18 (53019812-53020617)