Non-Coding RNA Search

Ss1.1-rtes23_e6.5

Sequence:


               
               AAAAGCTTAATCTTGAAACTACCTTACAAGAATCTACCACTGCAAGAGAAATGATGAAAA
GAGAAATGAGGATATTCAAAAATATAAATCCACCACTGAAGAGAATTTTCTCCAAGAAAT
AAAAAATGCAAAATCAGAAGCAAATATTTATAAGAATAGTTTGTCAGAAATGGGCAATGA
ATGTGAAATGTTATCAAAAATGGTAATAGAAATTAAAACTGATAATCAGATCCTAAAAGA
GGAATTAAAAAAACATAGTCAAGAAAGTATAAAATTTGAAAACAGCATCAGTAGACTTGA
GGAAGATAAAATACTTTTAGAAAACTATGTAAGAAGTATAGAAAATGAAAGGGATGCCTT
GGAATTTGAGATGCAGAATCTTCAAAGAGTCTATCTAAATCTAAGTGAAAAAATCTGTAG
TCAGCATATTGACCTATCAAAAATGGGTTATGTTTCAAGAAGAGAGAAACTCCATTTTGA
CAGCTATGATATTTATGAGGACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGCTTAATCTTGAAACTACCTTACAAGAATCTACCACTGCAAGAGAAATGATGAAAA
GAGAAATGAGGATATTCAAAAATATAAATCCACCACTGAAGAGAATTTTCTCCAAGAAAT
AAAAAATGCAAAATCAGAAGCAAATATTTATAAGAATAGTTTGTCAGAAATGGGCAATGA
ATGTGAAATGTTATCAAAAATGGTAATAGAAATTAAAACTGATAATCAGATCCTAAAAGA
GGAATTAAAAAAACATAGTCAAGAAAGTATAAAATTTGAAAACAGCATCAGTAGACTTGA
GGAAGATAAAATACTTTTAGAAAACTATGTAAGAAGTATAGAAAATGAAAGGGATGCCTT
GGAATTTGAGATGCAGAATCTTCAAAGAGTCTATCTAAATCTAAGTGAAAAAATCTGTAG
TCAGCATATTGACCTATCAAAAATGGGTTATGTTTCAAGAAGAGAGAAACTCCATTTTGA
CAGCTATGATATTTATGAGGACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-398, + strand, RNAz p=0.623768

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-398, + strand, RNAz p=0.623768

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-502, gnl|bosTau2|chr27 (9460341-9460843)
               

               
               1-502, gnl|canFam2|chr16 (48140920-48140031)
               

               
               1-502, gnl|echTel1|scaffold_66688 (7642-6744)
               

               
               1-502, gnl|galGal2|chr4 (61553804-61554681)
               

               
               1-502, gnl|hg17|chr4 (186754444-186755339)
               

               
               1-502, gnl|Hg17|chr4 (186754971-186754472)
               

               
               1-502, gnl|loxAfr1|scaffold_6684 (66216-65318)
               

               
               1-502, gnl|mm7|chr8 (44721420-44720522)
               

               
               1-502, gnl|Mm7|chr8 (44720888-44721390)
               

               
               1-502, gnl|monDom2|scaffold_9 (67813745-67814641)
               

               
               1-502, gnl|oryCun1|scaffold_201080 (339639-338741)
               

               
               1-502, gnl|panTro1|chr3 (204961455-204962350)
               

               
               1-502, gnl|rheMac2|chr5 (177565411-177566306)
               

               
               1-502, gnl|rn3|chr16 (49604090-49604988)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-502, gnl|bosTau2|chr27 (9460341-9460843)
               

               
               1-502, gnl|canFam2|chr16 (48140920-48140031)
               

               
               1-502, gnl|echTel1|scaffold_66688 (7642-6744)
               

               
               1-502, gnl|galGal2|chr4 (61553804-61554681)
               

               
               1-502, gnl|hg17|chr4 (186754444-186755339)
               

               
               1-502, gnl|Hg17|chr4 (186754971-186754472)
               

               
               1-502, gnl|loxAfr1|scaffold_6684 (66216-65318)
               

               
               1-502, gnl|mm7|chr8 (44721420-44720522)
               

               
               1-502, gnl|Mm7|chr8 (44720888-44721390)
               

               
               1-502, gnl|monDom2|scaffold_9 (67813745-67814641)
               

               
               1-502, gnl|oryCun1|scaffold_201080 (339639-338741)
               

               
               1-502, gnl|panTro1|chr3 (204961455-204962350)
               

               
               1-502, gnl|rheMac2|chr5 (177565411-177566306)
               

               
               1-502, gnl|rn3|chr16 (49604090-49604988)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-502, gnl\|bosTau2\|chr27 (9460341-9460843)
	1-502, gnl\|canFam2\|chr16 (48140920-48140031)
	1-502, gnl\|echTel1\|scaffold_66688 (7642-6744)
	1-502, gnl\|galGal2\|chr4 (61553804-61554681)
	1-502, gnl\|hg17\|chr4 (186754444-186755339)
	1-502, gnl\|Hg17\|chr4 (186754971-186754472)
	1-502, gnl\|loxAfr1\|scaffold_6684 (66216-65318)
	1-502, gnl\|mm7\|chr8 (44721420-44720522)
	1-502, gnl\|Mm7\|chr8 (44720888-44721390)
	1-502, gnl\|monDom2\|scaffold_9 (67813745-67814641)
	1-502, gnl\|oryCun1\|scaffold_201080 (339639-338741)
	1-502, gnl\|panTro1\|chr3 (204961455-204962350)
	1-502, gnl\|rheMac2\|chr5 (177565411-177566306)
	1-502, gnl\|rn3\|chr16 (49604090-49604988)