Ss1.1-rtes23_h13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGATAATACATATGTTTAAAGCTTAGTTATTTGGTTTAGAAATAAAATTCATACCCCCTC CCGGACGCGTGGGGCAATCGTTTGTGGGTGGGGACAGGAAACGGTGTCATTATCTCCATC CCACTGACGGAGACAAATAAAACCTCAGGAGCATCGGGAAATCGCCCTGGAAGTGTCATC CGAGTATATGGTGATGAAAACAGTGATAAAGTGACACCAGGGACATTCATACCCTATTGT TCAATGGCACATGCACAACTTTGCTTCCATGGGCACCGGGATGCTGTGAAATTCTTTGTG GCAGTTCCAGGTCAAGTCATCAGCCCACAGAGTGGCAGCAGTGGCACAGATCTAACAGCT GACAAAGTAGGGCCATCTGCACAGGAGCCTGGCAGCCAGACACCCTTGAAGTCTATGCTA GTCATCAGTGGAGGAGAGGGCTACATTGACTTCCGAATGGGTGATGAAGGTGGGGAATCA GAGCTTCTTGGAGAAGATCTTCCACTCGAACCTTCTGTCACCAAAGCAGAAAGGAGTCAC TTGATAGTGTGGCAAGTGATGTATGGTAGTGAGTGAACCCATAGGAAACAGGTGGTAACA GGGAAGCCGTCTCTTCTGCATGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGATAATACATATGTTTAAAGCTTAGTTATTTGGTTTAGAAATAAAATTCATACCCCCTC CCGGACGCGTGGGGCAATCGTTTGTGGGTGGGGACAGGAAACGGTGTCATTATCTCCATC CCACTGACGGAGACAAATAAAACCTCAGGAGCATCGGGAAATCGCCCTGGAAGTGTCATC CGAGTATATGGTGATGAAAACAGTGATAAAGTGACACCAGGGACATTCATACCCTATTGT TCAATGGCACATGCACAACTTTGCTTCCATGGGCACCGGGATGCTGTGAAATTCTTTGTG GCAGTTCCAGGTCAAGTCATCAGCCCACAGAGTGGCAGCAGTGGCACAGATCTAACAGCT GACAAAGTAGGGCCATCTGCACAGGAGCCTGGCAGCCAGACACCCTTGAAGTCTATGCTA GTCATCAGTGGAGGAGAGGGCTACATTGACTTCCGAATGGGTGATGAAGGTGGGGAATCA GAGCTTCTTGGAGAAGATCTTCCACTCGAACCTTCTGTCACCAAAGCAGAAAGGAGTCAC TTGATAGTGTGGCAAGTGATGTATGGTAGTGAGTGAACCCATAGGAAACAGGTGGTAACA GGGAAGCCGTCTCTTCTGCATGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 460-624, + strand, RNAz p=0.920248 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 460-624, + strand, RNAz p=0.920248 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AY236487, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 136-312, gnl|bosTau2|chr19 (28213768-28213592) | |
| 136-312, gnl|canFam2|chr9 (30155470-30155687) | |
| 136-312, gnl|danRer3|chr14 (36497485-36497277) | |
| 136-312, gnl|dasNov1|scaffold_6656 (53267-53049) | |
| 136-312, gnl|echTel1|scaffold_282228 (2831-3040) | |
| 136-312, gnl|fr1|chrUn (161980307-161980095) | |
| 136-312, gnl|galGal2|chr3_random (749412-749209) | |
| 136-312, gnl|hg17|chr17 (46407117-46407334) | |
| 136-312, gnl|Hg17|chr17 (46407305-46407129) | |
| 136-312, gnl|loxAfr1|scaffold_22802 (44811-44602) | |
| 136-312, gnl|mm7|chr11 (94223404-94223188) | |
| 136-312, gnl|Mm7|chr11 (94223214-94223390) | |
| 136-312, gnl|monDom2|scaffold_124 (2451165-2450949) | |
| 136-312, gnl|oryCun1|scaffold_212202 (150042-149825) | |
| 136-312, gnl|panTro1|chr19_random (32049458-32049675) | |
| 136-312, gnl|rheMac2|chr16 (35212117-35212334) | |
| 136-312, gnl|rn3|chr10 (82766272-82766056) | |
| 136-312, gnl|tetNig1|chr3 (8468834-8469042) | |
| 136-312, gnl|xenTro1|scaffold_135 (499873-500090) | |
| 460-624, gnl|bosTau2|chr19 (28208073-28207909) | |
| 460-624, gnl|Hg17|chr17 (46398748-46398584) | |
| 460-624, gnl|Mm7|chr11 (94231760-94231924) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 136-312, gnl|bosTau2|chr19 (28213768-28213592) | |
| 136-312, gnl|canFam2|chr9 (30155470-30155687) | |
| 136-312, gnl|danRer3|chr14 (36497485-36497277) | |
| 136-312, gnl|dasNov1|scaffold_6656 (53267-53049) | |
| 136-312, gnl|echTel1|scaffold_282228 (2831-3040) | |
| 136-312, gnl|fr1|chrUn (161980307-161980095) | |
| 136-312, gnl|galGal2|chr3_random (749412-749209) | |
| 136-312, gnl|hg17|chr17 (46407117-46407334) | |
| 136-312, gnl|Hg17|chr17 (46407305-46407129) | |
| 136-312, gnl|loxAfr1|scaffold_22802 (44811-44602) | |
| 136-312, gnl|mm7|chr11 (94223404-94223188) | |
| 136-312, gnl|Mm7|chr11 (94223214-94223390) | |
| 136-312, gnl|monDom2|scaffold_124 (2451165-2450949) | |
| 136-312, gnl|oryCun1|scaffold_212202 (150042-149825) | |
| 136-312, gnl|panTro1|chr19_random (32049458-32049675) | |
| 136-312, gnl|rheMac2|chr16 (35212117-35212334) | |
| 136-312, gnl|rn3|chr10 (82766272-82766056) | |
| 136-312, gnl|tetNig1|chr3 (8468834-8469042) | |
| 136-312, gnl|xenTro1|scaffold_135 (499873-500090) | |
| 460-624, gnl|bosTau2|chr19 (28208073-28207909) | |
| 460-624, gnl|Hg17|chr17 (46398748-46398584) | |
| 460-624, gnl|Mm7|chr11 (94231760-94231924) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| elu (0.385356) | |
| tes (0.207814) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| tes (0.207814) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| cty (0.10408) |