Non-Coding RNA Search

Ss1.1-rtes23_k22.5

Sequence:


               
               AGTGCATTTGCAGGAACCACGAAGCCCCCGTACTGGCCTAAGCCTGCCTATGAACTGGAT
GAAGAGGACCCAGGAAACAATGGCTTCATCAATGATGATTTCATCGTGTGGATGCGGACA
GCTGCCTTTCCCACTTTCAAAAAACTATACCGCCGACTCCATCGAGTACAGCATTTTACT
GAAGGATTGCCTGCTGGTAGTTATAGTTTCAACATAACCTACAATTTTCCAGTAAGCAGG
TTCCAAGGAGAAAAATCAGTTGTTCTTTCCACCCTGACATGGAGTGGAGGCAGTAGCCTT
TTCTTAGGTCTAGCCTACGTGGTGACAGGAGCTGTGACATGGTTGGCTTTCTTTTCCATG
ATGGCAATTCACTTGAGGCTGAAAGAAAGGAAAGGGTTCTTCCTCCAGTAGTAAAGTCAA
GCTTTGAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGCATTTGCAGGAACCACGAAGCCCCCGTACTGGCCTAAGCCTGCCTATGAACTGGAT
GAAGAGGACCCAGGAAACAATGGCTTCATCAATGATGATTTCATCGTGTGGATGCGGACA
GCTGCCTTTCCCACTTTCAAAAAACTATACCGCCGACTCCATCGAGTACAGCATTTTACT
GAAGGATTGCCTGCTGGTAGTTATAGTTTCAACATAACCTACAATTTTCCAGTAAGCAGG
TTCCAAGGAGAAAAATCAGTTGTTCTTTCCACCCTGACATGGAGTGGAGGCAGTAGCCTT
TTCTTAGGTCTAGCCTACGTGGTGACAGGAGCTGTGACATGGTTGGCTTTCTTTTCCATG
ATGGCAATTCACTTGAGGCTGAAAGAAAGGAAAGGGTTCTTCCTCCAGTAGTAAAGTCAA
GCTTTGAAAAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               52-211, - strand, RNAz p=0.634001

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-211, - strand, RNAz p=0.634001

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

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               11-223, gnl|bosTau2|chr1 (23960002-23960214)
               

               
               11-223, gnl|canFam2|chr33 (9810185-9810358)
               

               
               11-223, gnl|danRer3|chr9 (28748300-28748472)
               

               
               11-223, gnl|dasNov1|scaffold_595 (11814-11656)
               

               
               11-223, gnl|echTel1|scaffold_208879 (4494-4659)
               

               
               11-223, gnl|fr1|chrUn (191370848-191370697)
               

               
               11-223, gnl|galGal2|chr1 (78671839-78671637)
               

               
               11-223, gnl|hg17|chr3 (101409516-101409696)
               

               
               11-223, gnl|Hg17|chr3 (101409559-101409771)
               

               
               11-223, gnl|loxAfr1|scaffold_17780 (23379-23203)
               

               
               11-223, gnl|mm7|chr16 (57130967-57130786)
               

               
               11-223, gnl|Mm7|chr16 (57130921-57130709)
               

               
               11-223, gnl|monDom2|scaffold_50 (10518193-10518013)
               

               
               11-223, gnl|oryCun1|scaffold_104115 (6510-6688)
               

               
               11-223, gnl|panTro1|chr2 (102643821-102644001)
               

               
               11-223, gnl|rheMac2|chr2 (20414995-20415176)
               

               
               11-223, gnl|rn3|chr11 (44148592-44148771)
               

               
               11-223, gnl|tetNig1|chr2 (8446899-8446766)
               


               
               226-432, gnl|bosTau2|chr1 (23962924-23963130)
               

               
               226-432, gnl|Hg17|chr3 (101413112-101413318)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-223, gnl|bosTau2|chr1 (23960002-23960214)
               

               
               11-223, gnl|canFam2|chr33 (9810185-9810358)
               

               
               11-223, gnl|danRer3|chr9 (28748300-28748472)
               

               
               11-223, gnl|dasNov1|scaffold_595 (11814-11656)
               

               
               11-223, gnl|echTel1|scaffold_208879 (4494-4659)
               

               
               11-223, gnl|fr1|chrUn (191370848-191370697)
               

               
               11-223, gnl|galGal2|chr1 (78671839-78671637)
               

               
               11-223, gnl|hg17|chr3 (101409516-101409696)
               

               
               11-223, gnl|Hg17|chr3 (101409559-101409771)
               

               
               11-223, gnl|loxAfr1|scaffold_17780 (23379-23203)
               

               
               11-223, gnl|mm7|chr16 (57130967-57130786)
               

               
               11-223, gnl|Mm7|chr16 (57130921-57130709)
               

               
               11-223, gnl|monDom2|scaffold_50 (10518193-10518013)
               

               
               11-223, gnl|oryCun1|scaffold_104115 (6510-6688)
               

               
               11-223, gnl|panTro1|chr2 (102643821-102644001)
               

               
               11-223, gnl|rheMac2|chr2 (20414995-20415176)
               

               
               11-223, gnl|rn3|chr11 (44148592-44148771)
               

               
               11-223, gnl|tetNig1|chr2 (8446899-8446766)
               


               
               226-432, gnl|bosTau2|chr1 (23962924-23963130)
               

               
               226-432, gnl|Hg17|chr3 (101413112-101413318)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cte (0.87822)
               

               
               tes (0.415628)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               tes (0.415628)

	11-223, gnl\|bosTau2\|chr1 (23960002-23960214)
	11-223, gnl\|canFam2\|chr33 (9810185-9810358)
	11-223, gnl\|danRer3\|chr9 (28748300-28748472)
	11-223, gnl\|dasNov1\|scaffold_595 (11814-11656)
	11-223, gnl\|echTel1\|scaffold_208879 (4494-4659)
	11-223, gnl\|fr1\|chrUn (191370848-191370697)
	11-223, gnl\|galGal2\|chr1 (78671839-78671637)
	11-223, gnl\|hg17\|chr3 (101409516-101409696)
	11-223, gnl\|Hg17\|chr3 (101409559-101409771)
	11-223, gnl\|loxAfr1\|scaffold_17780 (23379-23203)
	11-223, gnl\|mm7\|chr16 (57130967-57130786)
	11-223, gnl\|Mm7\|chr16 (57130921-57130709)
	11-223, gnl\|monDom2\|scaffold_50 (10518193-10518013)
	11-223, gnl\|oryCun1\|scaffold_104115 (6510-6688)
	11-223, gnl\|panTro1\|chr2 (102643821-102644001)
	11-223, gnl\|rheMac2\|chr2 (20414995-20415176)
	11-223, gnl\|rn3\|chr11 (44148592-44148771)
	11-223, gnl\|tetNig1\|chr2 (8446899-8446766)

	226-432, gnl\|bosTau2\|chr1 (23962924-23963130)
	226-432, gnl\|Hg17\|chr3 (101413112-101413318)