Non-Coding RNA Search

Ss1.1-rtes24_g11.5

Sequence:


               
               GTTCCACCTGCTCACAGGTTGGCTGGCTCAACCAAGGCGGTATCCCCTGCTCTGAGCATC
AAGACTGAGTCCATCCATCACCATGGCCAGATACAGATGTTGCCGCAGCCATAGCCGGAG
CAGGTGCCGCCCCCGAAGACGAAGATGTCGCAGACGAAGGAGGCGATGTTGTCCGAGGCG
GAGGAGAGCGGTGTGCTGCCGCCGCTACACCGTTATAAGGTGTAGAAGATGCTAAACATG
CAGTAGCAAGACCACCGCACTCCTGCCTGAAATAGTACCAGCCTTCAAGACCCTCTCGCC
GCATCTTGAACATGCCACCGTTCCAATGAAGTGAACAGGAGCCTGCTAACGAACAACGCC
GCCTGTCAATAAATGTTGAAAAAATGCCAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCCACCTGCTCACAGGTTGGCTGGCTCAACCAAGGCGGTATCCCCTGCTCTGAGCATC
AAGACTGAGTCCATCCATCACCATGGCCAGATACAGATGTTGCCGCAGCCATAGCCGGAG
CAGGTGCCGCCCCCGAAGACGAAGATGTCGCAGACGAAGGAGGCGATGTTGTCCGAGGCG
GAGGAGAGCGGTGTGCTGCCGCCGCTACACCGTTATAAGGTGTAGAAGATGCTAAACATG
CAGTAGCAAGACCACCGCACTCCTGCCTGAAATAGTACCAGCCTTCAAGACCCTCTCGCC
GCATCTTGAACATGCCACCGTTCCAATGAAGTGAACAGGAGCCTGCTAACGAACAACGCC
GCCTGTCAATAAATGTTGAAAAAATGCCAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               HSP1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               HSP1_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-306, - strand, RNAz p=0.752467

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-306, - strand, RNAz p=0.752467

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               188-381, gnl|bosTau2|chr25 (10223870-10224063)
               

               
               188-381, gnl|canFam2|chr6 (34533260-34533143)
               

               
               188-381, gnl|dasNov1|scaffold_16001 (7433-7554)
               

               
               188-381, gnl|echTel1|scaffold_62309 (926-1047)
               

               
               188-381, gnl|hg17|chr16 (11282204-11282324)
               

               
               188-381, gnl|Hg17|chr16 (11282397-11282204)
               

               
               188-381, gnl|loxAfr1|scaffold_9292 (5309-5186)
               

               
               188-381, gnl|mm7|chr16 (10473884-10474005)
               

               
               188-381, gnl|Mm7|chr16 (10474085-10473884)
               

               
               188-381, gnl|monDom2|scaffold_17 (33234394-33234243)
               

               
               188-381, gnl|panTro1|chr18 (11614004-11614124)
               

               
               188-381, gnl|rheMac2|chr20 (11355612-11355732)
               

               
               188-381, gnl|rn3|chr10 (4808749-4808628)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               188-381, gnl|bosTau2|chr25 (10223870-10224063)
               

               
               188-381, gnl|canFam2|chr6 (34533260-34533143)
               

               
               188-381, gnl|dasNov1|scaffold_16001 (7433-7554)
               

               
               188-381, gnl|echTel1|scaffold_62309 (926-1047)
               

               
               188-381, gnl|hg17|chr16 (11282204-11282324)
               

               
               188-381, gnl|Hg17|chr16 (11282397-11282204)
               

               
               188-381, gnl|loxAfr1|scaffold_9292 (5309-5186)
               

               
               188-381, gnl|mm7|chr16 (10473884-10474005)
               

               
               188-381, gnl|Mm7|chr16 (10474085-10473884)
               

               
               188-381, gnl|monDom2|scaffold_17 (33234394-33234243)
               

               
               188-381, gnl|panTro1|chr18 (11614004-11614124)
               

               
               188-381, gnl|rheMac2|chr20 (11355612-11355732)
               

               
               188-381, gnl|rn3|chr10 (4808749-4808628)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (2.49377)
               

               
               cte (1.17096)
               

               
               cly (0.241284)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (2.49377)
               

               
               cte (1.17096)
               

               
               cly (0.241284)

	188-381, gnl\|bosTau2\|chr25 (10223870-10224063)
	188-381, gnl\|canFam2\|chr6 (34533260-34533143)
	188-381, gnl\|dasNov1\|scaffold_16001 (7433-7554)
	188-381, gnl\|echTel1\|scaffold_62309 (926-1047)
	188-381, gnl\|hg17\|chr16 (11282204-11282324)
	188-381, gnl\|Hg17\|chr16 (11282397-11282204)
	188-381, gnl\|loxAfr1\|scaffold_9292 (5309-5186)
	188-381, gnl\|mm7\|chr16 (10473884-10474005)
	188-381, gnl\|Mm7\|chr16 (10474085-10473884)
	188-381, gnl\|monDom2\|scaffold_17 (33234394-33234243)
	188-381, gnl\|panTro1\|chr18 (11614004-11614124)
	188-381, gnl\|rheMac2\|chr20 (11355612-11355732)
	188-381, gnl\|rn3\|chr10 (4808749-4808628)