Non-Coding RNA Search

Ss1.1-rtes24_j16.5

Sequence:


               
               CACTAATGGTAGGGTAGGACAAGCAGTGCCCAGGCCTGCAAGCTTGCTGCACACAAGGAA
CTCAAGCAAGAGTTCATCATGCCAATCAAACCTGTTGGGTGGATATGTGGGCAGGTGTTG
AAGAACTTCTCTGGAAGAATTGAGGGGATCCAGAAAGTAATCATGGACCTTTTAGATGAA
TTTAAAGATGAATTCCCTACCATCCTAAGATTATCACAGTCTAATCAGAAAAAAGAACCT
ATGCAAAAAACATCCAAAATCAGAATGGCTGTTGCTTTAGCCAAGATCAACCGAGGAACA
TTAATTCAAGGATTAAACAGCATATCTAGGTCTTCCAAATCGGTTGCCAAACTTCTGCAG
CCTCAGCTTGCTTGCAAACTTTTAGAGTTAAGGGACATATCTCATCGTCTGCTGAAGGAA
GTTAATACACCAAAGCAACCCCTGTATAACGTGCAGGTCCGGAAGGGATCTTTGTTTGAA
ATCATTTCTTTCCCAGCAAAGACTGCTTTAACTAGCATAATGTATGCTTCATATGCAGCA
CTAATTTATTTGACAGTCTGTGTTAATGCTGTGCTGGAGAAGGTAACAAAAATTTTCCAA
GAAGAAGAATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTAATGGTAGGGTAGGACAAGCAGTGCCCAGGCCTGCAAGCTTGCTGCACACAAGGAA
CTCAAGCAAGAGTTCATCATGCCAATCAAACCTGTTGGGTGGATATGTGGGCAGGTGTTG
AAGAACTTCTCTGGAAGAATTGAGGGGATCCAGAAAGTAATCATGGACCTTTTAGATGAA
TTTAAAGATGAATTCCCTACCATCCTAAGATTATCACAGTCTAATCAGAAAAAAGAACCT
ATGCAAAAAACATCCAAAATCAGAATGGCTGTTGCTTTAGCCAAGATCAACCGAGGAACA
TTAATTCAAGGATTAAACAGCATATCTAGGTCTTCCAAATCGGTTGCCAAACTTCTGCAG
CCTCAGCTTGCTTGCAAACTTTTAGAGTTAAGGGACATATCTCATCGTCTGCTGAAGGAA
GTTAATACACCAAAGCAACCCCTGTATAACGTGCAGGTCCGGAAGGGATCTTTGTTTGAA
ATCATTTCTTTCCCAGCAAAGACTGCTTTAACTAGCATAATGTATGCTTCATATGCAGCA
CTAATTTATTTGACAGTCTGTGTTAATGCTGTGCTGGAGAAGGTAACAAAAATTTTCCAA
GAAGAAGAATCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28703919|gb|AAH47333.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28703919|gb|AAH47333.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               22-139, + strand, RNAz p=0.56537

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               22-139, + strand, RNAz p=0.56537

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_031952, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_031952, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-139, gnl|bosTau2|chr26 (31784130-31784256)
               

               
               1-139, gnl|Hg17|chr5 (95044392-95044254)
               


               
               225-458, gnl|bosTau2|chr26 (31795875-31796108)
               

               
               225-458, gnl|Hg17|chr5 (95037103-95036870)
               

               
               225-458, gnl|Mm7|chr13 (72989150-72989383)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-139, gnl|bosTau2|chr26 (31784130-31784256)
               

               
               1-139, gnl|Hg17|chr5 (95044392-95044254)
               


               
               225-458, gnl|bosTau2|chr26 (31795875-31796108)
               

               
               225-458, gnl|Hg17|chr5 (95037103-95036870)
               

               
               225-458, gnl|Mm7|chr13 (72989150-72989383)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-139, gnl\|bosTau2\|chr26 (31784130-31784256)
	1-139, gnl\|Hg17\|chr5 (95044392-95044254)

	225-458, gnl\|bosTau2\|chr26 (31795875-31796108)
	225-458, gnl\|Hg17\|chr5 (95037103-95036870)
	225-458, gnl\|Mm7\|chr13 (72989150-72989383)