Non-Coding RNA Search

Ss1.1-rtes24_l16.5

Sequence:


               
               CCTGGAGACTCCAAGATGAAGCCCACCAGCACCAGCAGAGCAGCCCCCCTCTCATCCATC
TTCAGCCTGTCCGGCTTCAGCTCACTCAACTGGATTTCTTCTCTCTCGTTGGTCAGCGGG
CTGGGAAGCGTCCTACAGTTCTCCCGAAGTGGTTTACAGATGGACAAGCAGGACAGCGAG
TTCTTGCCTAGCCCCCTTCCGCCAGACCAGAACCTACAGGCCACAGACTATTTCTAGGAG
CCCTTCCAGGGCCTGCGGCTGCTGGTGGCAGTGGTGAAAACCTCGAAATGCTCTTTTTTT
TTTTTTTATAACATAGACATTAATATTATTTATGTTTCTTATTTGCACAGAAGAGTTCTA
GTGAGATGTATTTTATATATTTCCAAGGCTAACACAGGAAATGAAAGGTACCAAAAAGAA
AGTTTATTTTTTAAAATTTCTAAGTAGAGTATATTGAAGAGAAAAATAAGAGCTTTAACA
TATATAAAAGTTTAAAGGAGAGTGACACTTGAAAGGGTGTGTTTGGATTTATTTTTTCAT
CTCGTTTTATAAGAAAATGCATTCTGACTGGTTTTCTTCAACTCATGTGGCCTTTGCTTT
CCCCAAGTGTAAACATATGTGAGCACAGTGAACCCTGGGCGGGTGTGGAGGGAGGGAGGA
GGTGGGCAAGTACACAGCCCCAGCAGATCTCCCTGCCGTCTTGTTTCTCCATCCCACCAC
TAGGGGGTGGGGGGGCTTTGCTTCACCAGGAACGGGAAAGTGAGAACTCCAGGAAAACCT
ACAGAAGTTCATCCCCGTGCTCATTTTTTACACAGGCATTAGGTAAAGATCACCTGCAGG
TATTACAGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGAGACTCCAAGATGAAGCCCACCAGCACCAGCAGAGCAGCCCCCCTCTCATCCATC
TTCAGCCTGTCCGGCTTCAGCTCACTCAACTGGATTTCTTCTCTCTCGTTGGTCAGCGGG
CTGGGAAGCGTCCTACAGTTCTCCCGAAGTGGTTTACAGATGGACAAGCAGGACAGCGAG
TTCTTGCCTAGCCCCCTTCCGCCAGACCAGAACCTACAGGCCACAGACTATTTCTAGGAG
CCCTTCCAGGGCCTGCGGCTGCTGGTGGCAGTGGTGAAAACCTCGAAATGCTCTTTTTTT
TTTTTTTATAACATAGACATTAATATTATTTATGTTTCTTATTTGCACAGAAGAGTTCTA
GTGAGATGTATTTTATATATTTCCAAGGCTAACACAGGAAATGAAAGGTACCAAAAAGAA
AGTTTATTTTTTAAAATTTCTAAGTAGAGTATATTGAAGAGAAAAATAAGAGCTTTAACA
TATATAAAAGTTTAAAGGAGAGTGACACTTGAAAGGGTGTGTTTGGATTTATTTTTTCAT
CTCGTTTTATAAGAAAATGCATTCTGACTGGTTTTCTTCAACTCATGTGGCCTTTGCTTT
CCCCAAGTGTAAACATATGTGAGCACAGTGAACCCTGGGCGGGTGTGGAGGGAGGGAGGA
GGTGGGCAAGTACACAGCCCCAGCAGATCTCCCTGCCGTCTTGTTTCTCCATCCCACCAC
TAGGGGGTGGGGGGGCTTTGCTTCACCAGGAACGGGAAAGTGAGAACTCCAGGAAAACCT
ACAGAAGTTCATCCCCGTGCTCATTTTTTACACAGGCATTAGGTAAAGATCACCTGCAGG
TATTACAGTTCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-851, gnl|bosTau2|chr21 (3397269-3396398)
               

               
               1-851, gnl|Hg17|chr15 (23475853-23475011)
               

               
               1-851, gnl|Mm7|chr7 (55077391-55078266)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-851, gnl|bosTau2|chr21 (3397269-3396398)
               

               
               1-851, gnl|Hg17|chr15 (23475853-23475011)
               

               
               1-851, gnl|Mm7|chr7 (55077391-55078266)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cag (0.302389)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               hlv (0.139256)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               hlv (0.139256)
               

               
               jca (0.11396)

	1-851, gnl\|bosTau2\|chr21 (3397269-3396398)
	1-851, gnl\|Hg17\|chr15 (23475853-23475011)
	1-851, gnl\|Mm7\|chr7 (55077391-55078266)

	cag (0.302389)
	tes (0.207814)
	gul (0.177588)
	hlv (0.139256)
	jca (0.11396)