Non-Coding RNA Search

Ss1.1-rtes24_o22.5

Sequence:


               
               AGAAGTCCCTGGTCGAACCCACCTGCTTGAACGGCAGGTTAAGGAGATGATCCATTTAAG
CTTCAAGGTCTCCCACAGGGACAAGATGCTTCGGGTGTTGGATGTTCAAAAGGTTGTCAA
TTTGAGAACATGGCTGAAGACTCAACTTTATAAATTGAGCAATGAAACATGGAAAGGTGC
CTTTATCCTTCAAGGCAAGCTTCTAGATGTCCGCCAAAACCTGGAATCCAAACTGAATGA
AATATTAAAGAACTTCTCTGAAGTTGCTTGTTCTGAAGACTGTGTTGTGACTGAAGGTCC
TATCCTGGATTGTTGGACCTGTCTTCGCATCAACGCCCGGTGCTTCAAAGGAGAGTATTG
TCCTGGATTGTTGGACCTGTCTTCGCATCAACGCCCGGTGCTTCAAAGGAGAGTATTGTT
CAGAAGATGATCCAAAGAAAGCCGAGAATCGAGAAATTGCACTATTTCTGATATTGCTAG
CAGAAGTTGTAATATTGGGAAGTTCTTTGTTACTATTCCATTTCTGTGTCTCTCATCGGA
GGAAAATGAAGGCAATACGAAGGTCATTAAAGAAATATCTGGAGAAGAAACTTGAGGAAT
TAATGGGAATAATGGATGAGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTCCCTGGTCGAACCCACCTGCTTGAACGGCAGGTTAAGGAGATGATCCATTTAAG
CTTCAAGGTCTCCCACAGGGACAAGATGCTTCGGGTGTTGGATGTTCAAAAGGTTGTCAA
TTTGAGAACATGGCTGAAGACTCAACTTTATAAATTGAGCAATGAAACATGGAAAGGTGC
CTTTATCCTTCAAGGCAAGCTTCTAGATGTCCGCCAAAACCTGGAATCCAAACTGAATGA
AATATTAAAGAACTTCTCTGAAGTTGCTTGTTCTGAAGACTGTGTTGTGACTGAAGGTCC
TATCCTGGATTGTTGGACCTGTCTTCGCATCAACGCCCGGTGCTTCAAAGGAGAGTATTG
TCCTGGATTGTTGGACCTGTCTTCGCATCAACGCCCGGTGCTTCAAAGGAGAGTATTGTT
CAGAAGATGATCCAAAGAAAGCCGAGAATCGAGAAATTGCACTATTTCTGATATTGCTAG
CAGAAGTTGTAATATTGGGAAGTTCTTTGTTACTATTCCATTTCTGTGTCTCTCATCGGA
GGAAAATGAAGGCAATACGAAGGTCATTAAAGAAATATCTGGAGAAGAAACTTGAGGAAT
TAATGGGAATAATGGATGAGAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5VZ72_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5VZ72_HUMAN

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-104, gnl|bosTau2|chr1 (88557609-88557506)
               

               
               1-104, gnl|canFam2|chr11 (46223590-46224378)
               

               
               1-104, gnl|dasNov1|scaffold_4315 (83058-82270)
               

               
               1-104, gnl|echTel1|scaffold_315944 (52025-52836)
               

               
               1-104, gnl|hg17|chr9 (24535005-24535812)
               

               
               1-104, gnl|Hg17|chr9 (24535522-24535419)
               

               
               1-104, gnl|loxAfr1|scaffold_143111 (3557-4365)
               

               
               1-104, gnl|mm7|chr4 (91538938-91539743)
               

               
               1-104, gnl|Mm7|chr4 (91539453-91539350)
               

               
               1-104, gnl|monDom2|scaffold_19 (21294901-21295630)
               

               
               1-104, gnl|oryCun1|scaffold_181598 (34338-35146)
               

               
               1-104, gnl|panTro1|chr11 (24979680-24980474)
               

               
               1-104, gnl|rheMac2|chr15 (52645723-52646525)
               

               
               1-104, gnl|rn3|chr5 (112119175-112119967)
               


               
               490-624, gnl|bosTau2|chr1 (88555528-88555392)
               

               
               490-624, gnl|Hg17|chr9 (24533397-24533253)
               

               
               490-624, gnl|Mm7|chr4 (91537390-91537241)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-104, gnl|bosTau2|chr1 (88557609-88557506)
               

               
               1-104, gnl|canFam2|chr11 (46223590-46224378)
               

               
               1-104, gnl|dasNov1|scaffold_4315 (83058-82270)
               

               
               1-104, gnl|echTel1|scaffold_315944 (52025-52836)
               

               
               1-104, gnl|hg17|chr9 (24535005-24535812)
               

               
               1-104, gnl|Hg17|chr9 (24535522-24535419)
               

               
               1-104, gnl|loxAfr1|scaffold_143111 (3557-4365)
               

               
               1-104, gnl|mm7|chr4 (91538938-91539743)
               

               
               1-104, gnl|Mm7|chr4 (91539453-91539350)
               

               
               1-104, gnl|monDom2|scaffold_19 (21294901-21295630)
               

               
               1-104, gnl|oryCun1|scaffold_181598 (34338-35146)
               

               
               1-104, gnl|panTro1|chr11 (24979680-24980474)
               

               
               1-104, gnl|rheMac2|chr15 (52645723-52646525)
               

               
               1-104, gnl|rn3|chr5 (112119175-112119967)
               


               
               490-624, gnl|bosTau2|chr1 (88555528-88555392)
               

               
               490-624, gnl|Hg17|chr9 (24533397-24533253)
               

               
               490-624, gnl|Mm7|chr4 (91537390-91537241)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-104, gnl\|bosTau2\|chr1 (88557609-88557506)
	1-104, gnl\|canFam2\|chr11 (46223590-46224378)
	1-104, gnl\|dasNov1\|scaffold_4315 (83058-82270)
	1-104, gnl\|echTel1\|scaffold_315944 (52025-52836)
	1-104, gnl\|hg17\|chr9 (24535005-24535812)
	1-104, gnl\|Hg17\|chr9 (24535522-24535419)
	1-104, gnl\|loxAfr1\|scaffold_143111 (3557-4365)
	1-104, gnl\|mm7\|chr4 (91538938-91539743)
	1-104, gnl\|Mm7\|chr4 (91539453-91539350)
	1-104, gnl\|monDom2\|scaffold_19 (21294901-21295630)
	1-104, gnl\|oryCun1\|scaffold_181598 (34338-35146)
	1-104, gnl\|panTro1\|chr11 (24979680-24980474)
	1-104, gnl\|rheMac2\|chr15 (52645723-52646525)
	1-104, gnl\|rn3\|chr5 (112119175-112119967)

	490-624, gnl\|bosTau2\|chr1 (88555528-88555392)
	490-624, gnl\|Hg17\|chr9 (24533397-24533253)
	490-624, gnl\|Mm7\|chr4 (91537390-91537241)