Non-Coding RNA Search

Ss1.1-rtes25_j5.5

Sequence:


               
               GCACATGGTTAAACCTCTCTATGATAGATACAGACTGGTAAAACAGATGCTGACAAGAGC
TAGCATCACTCCGGTCCTGGGATCTCCATCCACCAAGCGAAGGGGTCAGATGTTACAGCC
CATCATAGAAGGAGAAACTGCACATTTTTTTGAAGAAATCAAGGAAGAAGAAGAAGATGG
TGTTAGCCTGTCGTCTGAGTTAACTGATATCTTGAAAACTGCTGTACAGGCACAGTCTTC
ATTGGAAAACCCAGAATCTGATGTTGAAGAAAATCAAGAAAAACTGGCTCTAGATCTCCG
ATTATCAAGTACTCGAGCAGCTTCTATGCCTGAATTACTGGAACAACTATGGAAAGCCAG
AGCTGAAAAAAAGAAACTACGTAAAACATTACGGGAATTTGAAGAAGCATTTTATCAACA
GAATGGCAGGAATGCCCAGAAGGAGGATCGTGTTCCAGTACTTGAGGAGTACAGGGAGTA
CAAGAAAATTAAAGCCAAGCTTAGGCTTCTTGAAGTTCTTATCAGCAAACAAGATTCTTC
AAAATCCATATAAAACATGCTCCTTGAAAACATCATAAAATCAGTTGTATTCCTTGAAGC
TGTCATCATGTGTACGTGGCTAGTACTTTCATTCATTTTGTCAGGCACTCAGAGAATCTC
ATTCTGTCCTTGCTTGTGGTGCCACTAGAGAAGTGATGGGAGGGTGAGTAGGCCCTCTCT
AGAGAGGGCCATGTTCCGTATTAACCGCAGACTGTCCTCTCTACCTTTAGCGTAATCCAC
TTTTCTTCATGGTTTGGTACTACAGATACATCGTGTTAGTAAAAGACTGATATTTTATCT
TTTCAACTTCAAGAACTTTGGAGATAGAAGCTTTTTTTTTATTACCAACTTTATGGTTTG
GTTTTTCATTACTCAAGAAAAGTGAGAGGAAAATCTTCACATTGAATTCTTCAGTTGCCT
TTTTCTTACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACATGGTTAAACCTCTCTATGATAGATACAGACTGGTAAAACAGATGCTGACAAGAGC
TAGCATCACTCCGGTCCTGGGATCTCCATCCACCAAGCGAAGGGGTCAGATGTTACAGCC
CATCATAGAAGGAGAAACTGCACATTTTTTTGAAGAAATCAAGGAAGAAGAAGAAGATGG
TGTTAGCCTGTCGTCTGAGTTAACTGATATCTTGAAAACTGCTGTACAGGCACAGTCTTC
ATTGGAAAACCCAGAATCTGATGTTGAAGAAAATCAAGAAAAACTGGCTCTAGATCTCCG
ATTATCAAGTACTCGAGCAGCTTCTATGCCTGAATTACTGGAACAACTATGGAAAGCCAG
AGCTGAAAAAAAGAAACTACGTAAAACATTACGGGAATTTGAAGAAGCATTTTATCAACA
GAATGGCAGGAATGCCCAGAAGGAGGATCGTGTTCCAGTACTTGAGGAGTACAGGGAGTA
CAAGAAAATTAAAGCCAAGCTTAGGCTTCTTGAAGTTCTTATCAGCAAACAAGATTCTTC
AAAATCCATATAAAACATGCTCCTTGAAAACATCATAAAATCAGTTGTATTCCTTGAAGC
TGTCATCATGTGTACGTGGCTAGTACTTTCATTCATTTTGTCAGGCACTCAGAGAATCTC
ATTCTGTCCTTGCTTGTGGTGCCACTAGAGAAGTGATGGGAGGGTGAGTAGGCCCTCTCT
AGAGAGGGCCATGTTCCGTATTAACCGCAGACTGTCCTCTCTACCTTTAGCGTAATCCAC
TTTTCTTCATGGTTTGGTACTACAGATACATCGTGTTAGTAAAAGACTGATATTTTATCT
TTTCAACTTCAAGAACTTTGGAGATAGAAGCTTTTTTTTTATTACCAACTTTATGGTTTG
GTTTTTCATTACTCAAGAAAAGTGAGAGGAAAATCTTCACATTGAATTCTTCAGTTGCCT
TTTTCTTACAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61863114|ref|XP_589659.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61863114|ref|XP_589659.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               428-583, - strand, RNAz p=0.984298

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               428-583, - strand, RNAz p=0.984298

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC044581, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC044581, -

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               162-335, gnl|bosTau2|chr7 (34518794-34518621)
               

               
               162-335, gnl|Hg17|chr5 (137306628-137306455)
               

               
               162-335, gnl|Mm7|chr18 (34820907-34820734)
               


               
               428-972, gnl|bosTau2|chr7 (34515579-34515031)
               

               
               428-972, gnl|Hg17|chr5 (137303938-137303388)
               

               
               428-972, gnl|Mm7|chr18 (34818232-34817725)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               162-335, gnl|bosTau2|chr7 (34518794-34518621)
               

               
               162-335, gnl|Hg17|chr5 (137306628-137306455)
               

               
               162-335, gnl|Mm7|chr18 (34820907-34820734)
               


               
               428-972, gnl|bosTau2|chr7 (34515579-34515031)
               

               
               428-972, gnl|Hg17|chr5 (137303938-137303388)
               

               
               428-972, gnl|Mm7|chr18 (34818232-34817725)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ecc (0.23007)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.23007)
               

               
               tes (0.207814)

	162-335, gnl\|bosTau2\|chr7 (34518794-34518621)
	162-335, gnl\|Hg17\|chr5 (137306628-137306455)
	162-335, gnl\|Mm7\|chr18 (34820907-34820734)

	428-972, gnl\|bosTau2\|chr7 (34515579-34515031)
	428-972, gnl\|Hg17\|chr5 (137303938-137303388)
	428-972, gnl\|Mm7\|chr18 (34818232-34817725)