Non-Coding RNA Search

Ss1.1-rtes25_l23.5

Sequence:


               
               TGCTCAGGACACCTCATCCCCGCTGCTGCAGACGAGTGGCCGGGCCTGGAGGCTAGCGGT
GTGAATATGAACTGATTTGTTTCCAGCCCTGGGCCGCCAAACCGCCCGACGAGTGAGGAG
AAAGCGGCACGTAAGCCTGGGCAGATCCCAGACGTGCAGCCGGGGAACTGTCTCTGGCCG
GCCCACGAGGCGCTTGAGGGTCAGAAAGGGCCCGCCCTTCCCAGCCCGGGGCCCAGCAGG
GCGAAGGTTGTTCCCAAGGCCACGTGAGGCTTCTTCGCCCCTAAAAGCCCCAAGCAGACC
GGGCTCATGAGAGAAGAAAGTTAAAGACGCCCCAACGTCTCTATCGCAGCACCAGCAGCC
GCCACCGCCGGCCCCGAGGGCACCTCGTCCAGCGGAGCAGAGATCGCGGCCGCAGAGCGA
TGTCCCGCCGCAGCCGGGACGGGCGCCTTGGGCTGCCCGCGCCGCCGGCCCCGCTGCTGC
TGCTGCTGCTTCTGGCCGCCGCAGTGCCTCCGAGCCTGGCAGGGGTCTACTATGCAACTG
CGTACTGGATGCCTACTGAGAAGAGAATGCTAGTCAAAAATGTTCTGGACAGGAATGGGG
ATGCCTACGGTTTTTACAATGACTCTATGAAAACCACAGGCTGGGGCATCCTTGAGATCA
GAGCGGGGTACGGTTCTCAATCCCTAAGCAATAATATCATCATGTTCGCAGCCGGCTATT
TGGAGGGTTACCTCACTGCCCCACACATATATGACCATTTCACAAACCTCTACCCACAGC
TGATTAAGAAATCTTCTGTGCTGGATAAAGTGCAGGACTTTTTGAGGAAGCAAGATCAGT
GGACCCGGGATAACATCAAAAATTACAAAAATGATCCATTTTGGAGACATACCGGTTATG
TTATGGCACAAATGGACGGGCTCTATGTAGGGGCAATGAAGAGGGCTGTATCGGAAGGAA
GGAAGCCTATAACCCTGTTCCAGATTCAGTTCCTGAATGCTGTTGGAGATCTGCTGGATC
TGATTCCCTCTCTTTCTCCTATAAACTACTCCGACCTGAAAGTTTTCAAGAGATGGGACA
TGGGACATTGCTCTGCTCTCATTAAGGTTCTTCCTGGATTTGAGAACATCTTTTTTGCTC
ACTCAAGCTGGTACACATATGCAGCCATGCTCAGGATATATAAACACTGGGACTTCAACA
TCATTGATAAAGACACCAGCAGTAGTCGCCTCTCTTTCAGCAGTTACCCAGGATTTTTGG
AGTCTCTGGATGACTTTTACCTTCTTGGCAGTGGTTTGGTATTGCTGCAGACCACAAACA
GTGTGTATAATAAAACCCTAATGAAACAGGTGGTACCCCAGTCTCTCCTAGCCTGGCAAA
GAGTCCGAGTGGCCAATATGATGGCAAGTGGCGGCAAGCAGTGGGCGGAGGTCTTTTCAA
AATACAACTCTGGCACCTATAACAATCAATACATGGTCCTGGACCTGAAGAAGGTAAATC
TGAACTATGGCCTTGGCAAAGGCACTCTGTACATTGTGGAGCAAATTCCTACATATGTGG
AATACTCTGAACAAACTGATGTTCTGAAGAGAGGATACTGGCCCTCTTACAACATTCCTT
TCCATGAGAAAATCTACAACTGGAGTGGCTATCCAATGTTAGTTAAGAAGCTGGGTTTGG
ACTTCTCTTATGCTCTGGCTTCCCGAGCCAAAATCTTCCGGCGGGACCAAGGAAAAGTGA
CTGATATGGAATCCATGAAATATATCATGCGATACAACAATTACAAGAAGGAGCCTTATA
GTAAAGGTGACCCCTGCAATACCATTTGCTGCCGTGAGGACCTGAACGAACTTAACCCAA
GTCCTGGAGGTTGCTATGACACCAAGGTGGCGGATATCCACCTGGCATCCACGTATACAG
CCTATGCCATTAGTGGGCCCACAGTACAAGATGGCCTCCCTGTTTTTCACTGGAACCATT
TCAACAAAACTCTCCATGAAGGCATGCCAGAGGCCTACAACTTCGATTTTATTACCATGA
AACCAACTTTGTAACTTGACACAGAACGAAGGAGGGAGATGAGGGAATAGAAGGCTGCAA
ATAAGATACCAAAGGCACTCTTTTAGCTATGATTTCCATTCAGAATTAGTCTTAATAAAA
TATATTAAATTCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTCAGGACACCTCATCCCCGCTGCTGCAGACGAGTGGCCGGGCCTGGAGGCTAGCGGT
GTGAATATGAACTGATTTGTTTCCAGCCCTGGGCCGCCAAACCGCCCGACGAGTGAGGAG
AAAGCGGCACGTAAGCCTGGGCAGATCCCAGACGTGCAGCCGGGGAACTGTCTCTGGCCG
GCCCACGAGGCGCTTGAGGGTCAGAAAGGGCCCGCCCTTCCCAGCCCGGGGCCCAGCAGG
GCGAAGGTTGTTCCCAAGGCCACGTGAGGCTTCTTCGCCCCTAAAAGCCCCAAGCAGACC
GGGCTCATGAGAGAAGAAAGTTAAAGACGCCCCAACGTCTCTATCGCAGCACCAGCAGCC
GCCACCGCCGGCCCCGAGGGCACCTCGTCCAGCGGAGCAGAGATCGCGGCCGCAGAGCGA
TGTCCCGCCGCAGCCGGGACGGGCGCCTTGGGCTGCCCGCGCCGCCGGCCCCGCTGCTGC
TGCTGCTGCTTCTGGCCGCCGCAGTGCCTCCGAGCCTGGCAGGGGTCTACTATGCAACTG
CGTACTGGATGCCTACTGAGAAGAGAATGCTAGTCAAAAATGTTCTGGACAGGAATGGGG
ATGCCTACGGTTTTTACAATGACTCTATGAAAACCACAGGCTGGGGCATCCTTGAGATCA
GAGCGGGGTACGGTTCTCAATCCCTAAGCAATAATATCATCATGTTCGCAGCCGGCTATT
TGGAGGGTTACCTCACTGCCCCACACATATATGACCATTTCACAAACCTCTACCCACAGC
TGATTAAGAAATCTTCTGTGCTGGATAAAGTGCAGGACTTTTTGAGGAAGCAAGATCAGT
GGACCCGGGATAACATCAAAAATTACAAAAATGATCCATTTTGGAGACATACCGGTTATG
TTATGGCACAAATGGACGGGCTCTATGTAGGGGCAATGAAGAGGGCTGTATCGGAAGGAA
GGAAGCCTATAACCCTGTTCCAGATTCAGTTCCTGAATGCTGTTGGAGATCTGCTGGATC
TGATTCCCTCTCTTTCTCCTATAAACTACTCCGACCTGAAAGTTTTCAAGAGATGGGACA
TGGGACATTGCTCTGCTCTCATTAAGGTTCTTCCTGGATTTGAGAACATCTTTTTTGCTC
ACTCAAGCTGGTACACATATGCAGCCATGCTCAGGATATATAAACACTGGGACTTCAACA
TCATTGATAAAGACACCAGCAGTAGTCGCCTCTCTTTCAGCAGTTACCCAGGATTTTTGG
AGTCTCTGGATGACTTTTACCTTCTTGGCAGTGGTTTGGTATTGCTGCAGACCACAAACA
GTGTGTATAATAAAACCCTAATGAAACAGGTGGTACCCCAGTCTCTCCTAGCCTGGCAAA
GAGTCCGAGTGGCCAATATGATGGCAAGTGGCGGCAAGCAGTGGGCGGAGGTCTTTTCAA
AATACAACTCTGGCACCTATAACAATCAATACATGGTCCTGGACCTGAAGAAGGTAAATC
TGAACTATGGCCTTGGCAAAGGCACTCTGTACATTGTGGAGCAAATTCCTACATATGTGG
AATACTCTGAACAAACTGATGTTCTGAAGAGAGGATACTGGCCCTCTTACAACATTCCTT
TCCATGAGAAAATCTACAACTGGAGTGGCTATCCAATGTTAGTTAAGAAGCTGGGTTTGG
ACTTCTCTTATGCTCTGGCTTCCCGAGCCAAAATCTTCCGGCGGGACCAAGGAAAAGTGA
CTGATATGGAATCCATGAAATATATCATGCGATACAACAATTACAAGAAGGAGCCTTATA
GTAAAGGTGACCCCTGCAATACCATTTGCTGCCGTGAGGACCTGAACGAACTTAACCCAA
GTCCTGGAGGTTGCTATGACACCAAGGTGGCGGATATCCACCTGGCATCCACGTATACAG
CCTATGCCATTAGTGGGCCCACAGTACAAGATGGCCTCCCTGTTTTTCACTGGAACCATT
TCAACAAAACTCTCCATGAAGGCATGCCAGAGGCCTACAACTTCGATTTTATTACCATGA
AACCAACTTTGTAACTTGACACAGAACGAAGGAGGGAGATGAGGGAATAGAAGGCTGCAA
ATAAGATACCAAAGGCACTCTTTTAGCTATGATTTCCATTCAGAATTAGTCTTAATAAAA
TATATTAAATTCAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10862820|emb|CAC13971.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10862820|emb|CAC13971.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1579-1776, gnl|bosTau2|chr3 (17951314-17951511)
               

               
               1579-1776, gnl|Hg17|chr12 (14551321-14551137)
               

               
               1579-1776, gnl|Mm7|chr6 (136631089-136630905)
               


               
               1780-2183, gnl|bosTau2|chr3 (17951583-17951994)
               

               
               1780-2183, gnl|Hg17|chr12 (14550469-14547871)
               

               
               1780-2183, gnl|Mm7|chr6 (136629953-136629184)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1579-1776, gnl|bosTau2|chr3 (17951314-17951511)
               

               
               1579-1776, gnl|Hg17|chr12 (14551321-14551137)
               

               
               1579-1776, gnl|Mm7|chr6 (136631089-136630905)
               


               
               1780-2183, gnl|bosTau2|chr3 (17951583-17951994)
               

               
               1780-2183, gnl|Hg17|chr12 (14550469-14547871)
               

               
               1780-2183, gnl|Mm7|chr6 (136629953-136629184)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

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               cov (2.77521)
               

               
               pla (0.66836)
               

               
               ute (0.663922)
               

               
               tes (0.415628)
               

               
               jej (0.296765)
               

               
               ldo (0.291008)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (2.77521)
               

               
               pla (0.66836)
               

               
               ute (0.663922)
               

               
               tes (0.415628)
               

               
               jej (0.296765)
               

               
               ldo (0.291008)
               

               
               mas (0.210305)
               

               
               cmu (0.186393)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	1579-1776, gnl\|bosTau2\|chr3 (17951314-17951511)
	1579-1776, gnl\|Hg17\|chr12 (14551321-14551137)
	1579-1776, gnl\|Mm7\|chr6 (136631089-136630905)

	1780-2183, gnl\|bosTau2\|chr3 (17951583-17951994)
	1780-2183, gnl\|Hg17\|chr12 (14550469-14547871)
	1780-2183, gnl\|Mm7\|chr6 (136629953-136629184)

	cov (2.77521)
	pla (0.66836)
	ute (0.663922)
	tes (0.415628)
	jej (0.296765)
	ldo (0.291008)
	mas (0.210305)
	cmu (0.186393)
	nje (0.16592)
	cag (0.151194)
	csk (0.140746)
	nca (0.136874)
	ste (0.135208)
	ova (0.129132)
	tra (0.123092)
	cty (0.10408)
	nbm (0.0993246)