Non-Coding RNA Search

Ss1.1-rtes26_d10.5

Sequence:


               
               CCTTCTAATTACTCCTGGAGTGTGGGGACAAAAGTCTCTGCTGTCCAAATTACTGGATCC
AGAAAAAAAAAAAAAAAATGACCTCATGAACATGGGAAAAGAAATCCAGCTGAAGCCCAA
GGCAAATGTCTCTTCTTACATCCACTTTTTGCTGAATTACAGAAACAAGTTCAAGGAGCA
GCAGCCAAACACTTACCTTGGCTTTAAAGAGTTCTCTAGAAAGTGTTCGGAAAAATGGAG
GTCCATCTCAAAGCACGAAAAGGCCAAATATGAAGCCTTGGCCAAGCTCGACAAAGCCCG
ATACCAGGAGGAGATGAGGAATTACGTGGGCGGGAAGAGGAAAAGGAGAAAGCGGGACCC
CCAGGCACCCAGGCGGCCTCCATCATCCTTCCTGCTCTTCTGCCAAGACAACTATGCCCA
GCTCAAGAGGGAGAACCCAAACTGGTCGGTAGCGCAGGTGGCAAAGGCCTCGGCAAGGAT
GTGGTCTACGACGACAGACGTCGACAAGCAGCCCTATGAACAAAGGGCAGCTCTCCTGAG
AGCCAAGTACCACGAGGAGCTAAGCGTCTACCAAAAACAATTCAACGGCAGCAAGAAGAG
CCCCCAAGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTCTAATTACTCCTGGAGTGTGGGGACAAAAGTCTCTGCTGTCCAAATTACTGGATCC
AGAAAAAAAAAAAAAAAATGACCTCATGAACATGGGAAAAGAAATCCAGCTGAAGCCCAA
GGCAAATGTCTCTTCTTACATCCACTTTTTGCTGAATTACAGAAACAAGTTCAAGGAGCA
GCAGCCAAACACTTACCTTGGCTTTAAAGAGTTCTCTAGAAAGTGTTCGGAAAAATGGAG
GTCCATCTCAAAGCACGAAAAGGCCAAATATGAAGCCTTGGCCAAGCTCGACAAAGCCCG
ATACCAGGAGGAGATGAGGAATTACGTGGGCGGGAAGAGGAAAAGGAGAAAGCGGGACCC
CCAGGCACCCAGGCGGCCTCCATCATCCTTCCTGCTCTTCTGCCAAGACAACTATGCCCA
GCTCAAGAGGGAGAACCCAAACTGGTCGGTAGCGCAGGTGGCAAAGGCCTCGGCAAGGAT
GTGGTCTACGACGACAGACGTCGACAAGCAGCCCTATGAACAAAGGGCAGCTCTCCTGAG
AGCCAAGTACCACGAGGAGCTAAGCGTCTACCAAAAACAATTCAACGGCAGCAAGAAGAG
CCCCCAAGGGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57232750|ref|NP_660206.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57232750|ref|NP_660206.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               198-317, - strand, RNAz p=0.978162

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               198-317, - strand, RNAz p=0.978162

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-596, gnl|bosTau2|chr3 (79778524-79779112)
               

               
               2-596, gnl|Hg17|chr1 (33998803-33999390)
               

               
               2-596, gnl|Mm7|chr4 (127705508-127704916)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-596, gnl|bosTau2|chr3 (79778524-79779112)
               

               
               2-596, gnl|Hg17|chr1 (33998803-33999390)
               

               
               2-596, gnl|Mm7|chr4 (127705508-127704916)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (2.90939)
               

               
               cte (0.29274)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (2.90939)
               

               
               cte (0.29274)

	2-596, gnl\|bosTau2\|chr3 (79778524-79779112)
	2-596, gnl\|Hg17\|chr1 (33998803-33999390)
	2-596, gnl\|Mm7\|chr4 (127705508-127704916)