Non-Coding RNA Search

Ss1.1-rtes26_g6.5

Sequence:


               
               AATGGTTTTTTTAACCACTTAACCTATTTTCTGGCTGCTGGTGCTGTTACTTTGGGAATT
GGTTTCTTTGCTTTGGCATCAGCTTTGTGGTTCCTGATTTGCAAACGAAGAGAAATATTT
CAAGATACCAAACTTAAAGCAACTGATGAGAGATGCAAGCAAAGACCATCAAAGGCGAAG
ATTAAATCTCATTCTCAGTGTGTTTTTATTTCTCGAAATTTTCATACTGGAAGTGTCCAG
TTACAGGAGGAGCAAAGAAGAAAGGAAACAGCACGTATAAAAGCAATTAAAGATCACTCT
AAAGATGAATTCTGCCTTGCAACAAAAAAGGTCATTTGTGATCCCTCAGAGACTAGCTCG
GCAACAAATCCCAGCAGTGTTACCTTAAGCTTATCAACATTGCCATCTGATTCTTATTAC
AGCCAAAGTATAGAAGTAGCTGATGACTGGTTTTCTGATGATCCTCTAGCAAAAAAGAGT
CCTCCAGTGCCTTTTCTCGGGGAGCCTCTAATGGAAAAAGTATTTTCATACTTATCAACC
ATTCCACTAGAAGAATGTACTGGAAATGTACTAAATATGACACTTTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGGTTTTTTTAACCACTTAACCTATTTTCTGGCTGCTGGTGCTGTTACTTTGGGAATT
GGTTTCTTTGCTTTGGCATCAGCTTTGTGGTTCCTGATTTGCAAACGAAGAGAAATATTT
CAAGATACCAAACTTAAAGCAACTGATGAGAGATGCAAGCAAAGACCATCAAAGGCGAAG
ATTAAATCTCATTCTCAGTGTGTTTTTATTTCTCGAAATTTTCATACTGGAAGTGTCCAG
TTACAGGAGGAGCAAAGAAGAAAGGAAACAGCACGTATAAAAGCAATTAAAGATCACTCT
AAAGATGAATTCTGCCTTGCAACAAAAAAGGTCATTTGTGATCCCTCAGAGACTAGCTCG
GCAACAAATCCCAGCAGTGTTACCTTAAGCTTATCAACATTGCCATCTGATTCTTATTAC
AGCCAAAGTATAGAAGTAGCTGATGACTGGTTTTCTGATGATCCTCTAGCAAAAAAGAGT
CCTCCAGTGCCTTTTCTCGGGGAGCCTCTAATGGAAAAAGTATTTTCATACTTATCAACC
ATTCCACTAGAAGAATGTACTGGAAATGTACTAAATATGACACTTTAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55958001|emb|CAI13130.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55958001|emb|CAI13130.1|

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               109-247, gnl|bosTau2|chr3 (64660140-64660002)
               

               
               109-247, gnl|canFam2|chr15 (13070704-13070389)
               

               
               109-247, gnl|echTel1|scaffold_220295 (6940-7289)
               

               
               109-247, gnl|hg17|chr1 (51296153-51296474)
               

               
               109-247, gnl|Hg17|chr1 (51296357-51296495)
               

               
               109-247, gnl|loxAfr1|scaffold_24928 (5731-6047)
               

               
               109-247, gnl|mm7|chr4 (108901117-108900783)
               

               
               109-247, gnl|Mm7|chr4 (108900898-108900760)
               

               
               109-247, gnl|oryCun1|scaffold_172403 (6062-5779)
               

               
               109-247, gnl|panTro1|chr1 (49503584-49503905)
               

               
               109-247, gnl|rheMac2|chr1 (53939037-53939358)
               

               
               109-247, gnl|rn3|chr5 (130889980-130889694)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-247, gnl|bosTau2|chr3 (64660140-64660002)
               

               
               109-247, gnl|canFam2|chr15 (13070704-13070389)
               

               
               109-247, gnl|echTel1|scaffold_220295 (6940-7289)
               

               
               109-247, gnl|hg17|chr1 (51296153-51296474)
               

               
               109-247, gnl|Hg17|chr1 (51296357-51296495)
               

               
               109-247, gnl|loxAfr1|scaffold_24928 (5731-6047)
               

               
               109-247, gnl|mm7|chr4 (108901117-108900783)
               

               
               109-247, gnl|Mm7|chr4 (108900898-108900760)
               

               
               109-247, gnl|oryCun1|scaffold_172403 (6062-5779)
               

               
               109-247, gnl|panTro1|chr1 (49503584-49503905)
               

               
               109-247, gnl|rheMac2|chr1 (53939037-53939358)
               

               
               109-247, gnl|rn3|chr5 (130889980-130889694)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (1.03907)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.03907)

	109-247, gnl\|bosTau2\|chr3 (64660140-64660002)
	109-247, gnl\|canFam2\|chr15 (13070704-13070389)
	109-247, gnl\|echTel1\|scaffold_220295 (6940-7289)
	109-247, gnl\|hg17\|chr1 (51296153-51296474)
	109-247, gnl\|Hg17\|chr1 (51296357-51296495)
	109-247, gnl\|loxAfr1\|scaffold_24928 (5731-6047)
	109-247, gnl\|mm7\|chr4 (108901117-108900783)
	109-247, gnl\|Mm7\|chr4 (108900898-108900760)
	109-247, gnl\|oryCun1\|scaffold_172403 (6062-5779)
	109-247, gnl\|panTro1\|chr1 (49503584-49503905)
	109-247, gnl\|rheMac2\|chr1 (53939037-53939358)
	109-247, gnl\|rn3\|chr5 (130889980-130889694)