Non-Coding RNA Search

Ss1.1-rtes27_a5.5

Sequence:


               
               AAAATTTAATACCTTAAAACTTAACATTAAAAAATC------------------------
------------------------------------------------------------
------------------------CTGAAATAAAATATTTCAGTACTATTTTAGTAAGTT
GCTCTTATAGCCCCTCAATTATTACAAAACAATTATAACTTGCAAAACTTTAGCTTACAT
CAAAATTAAAGCCTTCACATAAAGAAAAGCAGTCTTTTTTTTTCCAAGCCTATTTACATT
TTTTTCTAGCAATTAAAAAGGCCTAAGATGTGTTTTTAATCTTGTATAATCATACCCTCG
GGAGGTTCTGTTCATGTAGATTGGTTTGATGCCTTATTTATATAATCAGGTATTATAATT
TTATTAAAATGAAGAACTTTTTCTGTGTCATATCAGACCTTTGAGGCATTAAAAGCCACT
GTTGGCAATAAGCTGTGTTTTCTGAATTTCTAATAAAACATGACCCCACACTTCTCATTG
TTTAATGGAACAGACGTGCTTGGTCTGCTTGATGACTTCGTCATATTGGGACTAGATTAC
AGGGCTCTCTGTTTGCACAGAAATCTTGACAACGAAAAGTGATATTTTTAGGTCACTTAC
AGTTACCCACTACTGGGAATAATCCCATAATAGTAAACTTGCAAATGTTGATGCTTTCTT
TTTATAACAAAGTCTATTCTGCCTGCTTCGGCATACATAGTATTTGGTTAAAGATTGACG
GTTGGTTGTCACAAGGAAAGCAAGAAGGGCATATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATTTAATACCTTAAAACTTAACATTAAAAAATC------------------------
------------------------------------------------------------
------------------------CTGAAATAAAATATTTCAGTACTATTTTAGTAAGTT
GCTCTTATAGCCCCTCAATTATTACAAAACAATTATAACTTGCAAAACTTTAGCTTACAT
CAAAATTAAAGCCTTCACATAAAGAAAAGCAGTCTTTTTTTTTCCAAGCCTATTTACATT
TTTTTCTAGCAATTAAAAAGGCCTAAGATGTGTTTTTAATCTTGTATAATCATACCCTCG
GGAGGTTCTGTTCATGTAGATTGGTTTGATGCCTTATTTATATAATCAGGTATTATAATT
TTATTAAAATGAAGAACTTTTTCTGTGTCATATCAGACCTTTGAGGCATTAAAAGCCACT
GTTGGCAATAAGCTGTGTTTTCTGAATTTCTAATAAAACATGACCCCACACTTCTCATTG
TTTAATGGAACAGACGTGCTTGGTCTGCTTGATGACTTCGTCATATTGGGACTAGATTAC
AGGGCTCTCTGTTTGCACAGAAATCTTGACAACGAAAAGTGATATTTTTAGGTCACTTAC
AGTTACCCACTACTGGGAATAATCCCATAATAGTAAACTTGCAAATGTTGATGCTTTCTT
TTTATAACAAAGTCTATTCTGCCTGCTTCGGCATACATAGTATTTGGTTAAAGATTGACG
GTTGGTTGTCACAAGGAAAGCAAGAAGGGCATATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               421-536, - strand, RNAz p=0.566973

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-536, - strand, RNAz p=0.566973

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-708, gnl|bosTau2|chr6 (63395016-63394298)
               

               
               1-708, gnl|Hg17|chr4 (14734890-14735581)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr6 (63395016-63394298)
               

               
               1-708, gnl|Hg17|chr4 (14734890-14735581)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               aor (0.195274)
               

               
               spl (0.143184)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               spl (0.143184)

	1-708, gnl\|bosTau2\|chr6 (63395016-63394298)
	1-708, gnl\|Hg17\|chr4 (14734890-14735581)