Non-Coding RNA Search

Ss1.1-rtes27_b4.5

Sequence:


               
               ACTTCTGAACCTTCTCATGACAGTTTTGTGGTGTCCAAAGCTGATAATGTGAAACTAATG
CATCTATCTTTGATACAACAAGGGACAGTTGATGGTATTGTGGTGGTAGAGTCTGGCCAC
ATGACTCTAGAAAACTGTATATTAAAATGTGAAGGAACAGGAGTGTGTGTTCTTACAGGG
GCTGCTTTGACAATTACAGATAGTGAAATAACTGGTGCCCAGGGTGCTGGTGTTGAATTG
TATCCTGGGAGCATTGCTATTTTGGAAAGGAATGAAATTCATCACTGTAATAATCTCAGA
ACCAGTGACAGTTCAAAAAGCACCTTAGGTGGAGTTAATATGAAGGTTCTTCCAGCACCC
AAATTGAAGATGACTAATAATCATATTTACAACAACAATGGCTATGGAGTAAGCATTCTT
CAACCAACTGAACAGTTTTTTATTGTAGCAGAAGAAGCCCTCAACAAAGGGGCTGCTTCA
GGAGACAAAAAAGATGATAATATGCTCTCCAAAGTAATGCAAAATCTGAATCTGGAAATG
AATAATAATAAAATAGAGGCAAACTTAAAGGGGGATATTAGAATTGTCACAAGTTAAAGC
ATCTGGATGTTAGTTTTACATTTCAGATATGTTTAATAAATAATTCTCATATCCCAGAGA
AATGGGTAGCTTTAATGAAATTTAAAATTTAATAACTTTAGTGCTCTTTCATTGTGATTG
ATTTTAACATGTTCTTTTAAATAAATTTTTTGATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTCTGAACCTTCTCATGACAGTTTTGTGGTGTCCAAAGCTGATAATGTGAAACTAATG
CATCTATCTTTGATACAACAAGGGACAGTTGATGGTATTGTGGTGGTAGAGTCTGGCCAC
ATGACTCTAGAAAACTGTATATTAAAATGTGAAGGAACAGGAGTGTGTGTTCTTACAGGG
GCTGCTTTGACAATTACAGATAGTGAAATAACTGGTGCCCAGGGTGCTGGTGTTGAATTG
TATCCTGGGAGCATTGCTATTTTGGAAAGGAATGAAATTCATCACTGTAATAATCTCAGA
ACCAGTGACAGTTCAAAAAGCACCTTAGGTGGAGTTAATATGAAGGTTCTTCCAGCACCC
AAATTGAAGATGACTAATAATCATATTTACAACAACAATGGCTATGGAGTAAGCATTCTT
CAACCAACTGAACAGTTTTTTATTGTAGCAGAAGAAGCCCTCAACAAAGGGGCTGCTTCA
GGAGACAAAAAAGATGATAATATGCTCTCCAAAGTAATGCAAAATCTGAATCTGGAAATG
AATAATAATAAAATAGAGGCAAACTTAAAGGGGGATATTAGAATTGTCACAAGTTAAAGC
ATCTGGATGTTAGTTTTACATTTCAGATATGTTTAATAAATAATTCTCATATCCCAGAGA
AATGGGTAGCTTTAATGAAATTTAAAATTTAATAACTTTAGTGCTCTTTCATTGTGATTG
ATTTTAACATGTTCTTTTAAATAAATTTTTTGATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61819385|ref|XP_597678.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61819385|ref|XP_597678.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               374-533, + strand, RNAz p=0.975189

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               374-533, + strand, RNAz p=0.975189

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC050305, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC050305, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-223, gnl|bosTau2|chr16 (45361242-45361464)
               

               
               1-223, gnl|canFam2|chr7 (19262477-19262781)
               

               
               1-223, gnl|hg17|chr1 (179604936-179605247)
               

               
               1-223, gnl|Hg17|chr1 (179605193-179604971)
               

               
               1-223, gnl|loxAfr1|scaffold_63435 (2203-2514)
               

               
               1-223, gnl|mm7|chr1 (153409081-153408777)
               

               
               1-223, gnl|Mm7|chr1 (153408823-153409045)
               

               
               1-223, gnl|monDom2|scaffold_16 (36662893-36663200)
               

               
               1-223, gnl|oryCun1|scaffold_148468 (9102-8791)
               

               
               1-223, gnl|panTro1|chr1 (162132993-162133304)
               

               
               1-223, gnl|rheMac2|chr1 (187753703-187753392)
               

               
               1-223, gnl|rn3|chr13 (68477919-68477617)
               


               
               336-693, gnl|bosTau2|chr16 (45362871-45363226)
               

               
               336-693, gnl|Hg17|chr1 (179601037-179600677)
               

               
               336-693, gnl|Mm7|chr1 (153413272-153413629)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-223, gnl|bosTau2|chr16 (45361242-45361464)
               

               
               1-223, gnl|canFam2|chr7 (19262477-19262781)
               

               
               1-223, gnl|hg17|chr1 (179604936-179605247)
               

               
               1-223, gnl|Hg17|chr1 (179605193-179604971)
               

               
               1-223, gnl|loxAfr1|scaffold_63435 (2203-2514)
               

               
               1-223, gnl|mm7|chr1 (153409081-153408777)
               

               
               1-223, gnl|Mm7|chr1 (153408823-153409045)
               

               
               1-223, gnl|monDom2|scaffold_16 (36662893-36663200)
               

               
               1-223, gnl|oryCun1|scaffold_148468 (9102-8791)
               

               
               1-223, gnl|panTro1|chr1 (162132993-162133304)
               

               
               1-223, gnl|rheMac2|chr1 (187753703-187753392)
               

               
               1-223, gnl|rn3|chr13 (68477919-68477617)
               


               
               336-693, gnl|bosTau2|chr16 (45362871-45363226)
               

               
               336-693, gnl|Hg17|chr1 (179601037-179600677)
               

               
               336-693, gnl|Mm7|chr1 (153413272-153413629)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-223, gnl\|bosTau2\|chr16 (45361242-45361464)
	1-223, gnl\|canFam2\|chr7 (19262477-19262781)
	1-223, gnl\|hg17\|chr1 (179604936-179605247)
	1-223, gnl\|Hg17\|chr1 (179605193-179604971)
	1-223, gnl\|loxAfr1\|scaffold_63435 (2203-2514)
	1-223, gnl\|mm7\|chr1 (153409081-153408777)
	1-223, gnl\|Mm7\|chr1 (153408823-153409045)
	1-223, gnl\|monDom2\|scaffold_16 (36662893-36663200)
	1-223, gnl\|oryCun1\|scaffold_148468 (9102-8791)
	1-223, gnl\|panTro1\|chr1 (162132993-162133304)
	1-223, gnl\|rheMac2\|chr1 (187753703-187753392)
	1-223, gnl\|rn3\|chr13 (68477919-68477617)

	336-693, gnl\|bosTau2\|chr16 (45362871-45363226)
	336-693, gnl\|Hg17\|chr1 (179601037-179600677)
	336-693, gnl\|Mm7\|chr1 (153413272-153413629)