Non-Coding RNA Search

Ss1.1-rtes27_c5.5

Sequence:


               
               ATTTTAAGAGCTGAGCACAGAGCAAGACCCTGGCCTCCTGCCGGGAAACTCTGATCTTCT
GCTGTGAGGAGAGGCTCCAAGCTGTGGAGTTAATGAACCAGCCACTGGACAAGGTTCTAG
AGCAGGCCTGCCGCCACTCTTGGGTGAACCTCTCCAGAGTTCCCACCCCTCGCACTCAGG
GCTTGAAAACTCCGACCTCCAGACCCTGTGGGCACCTATACTCCAGAGTGCGCCACTGCA
CTGTATGAAGCCAAGCAACTGCTGATGGAGTCCAAGGACACTTGGCTAGATATGGCAAAG
AACGAGGAGGACATCCGGGAACAACAACAGCAGATAAGCGATCGCGTGTGCGCCTCGATA
GCACAAAAAATGCGTGAGACTTTGGGGCTGAAGGATAAAATGAACATGACCTTAGGACTA
ATGAGGAGAACTATCCACCGGTGCACGAAATTCAACCAGGAGATGTACATCACCCACGGC
CTCACCAAGGGTCCTCTGTCTAAAACTCACCTGGAGACTCGAGAGAAACTGGACAGACCT
CTGGTTCGTGTATACCAGAGACACGTGGGCACCCAACTCCCAGAAGCCACGCGCCTTGCC
CAGGGCACTGACAAGCTGCAGCGCCACATCTCCCTTGCGGAAAAGAATCTGAAGGAGCTC
CTCGCTGCGCGCAAGAACCTCACCTGGAGCCTGAACTGCAAGAAGATTGGGCATGAAGTG
GACGACAACGTGGTGCGCCTGCGCCTCCGCCAACGGCACCCACAAGTGTGCTACGAGCAA
GCGCAACGCCTAGTCAGCGACTGGGACCCACGCACGCCGCCGCGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTAAGAGCTGAGCACAGAGCAAGACCCTGGCCTCCTGCCGGGAAACTCTGATCTTCT
GCTGTGAGGAGAGGCTCCAAGCTGTGGAGTTAATGAACCAGCCACTGGACAAGGTTCTAG
AGCAGGCCTGCCGCCACTCTTGGGTGAACCTCTCCAGAGTTCCCACCCCTCGCACTCAGG
GCTTGAAAACTCCGACCTCCAGACCCTGTGGGCACCTATACTCCAGAGTGCGCCACTGCA
CTGTATGAAGCCAAGCAACTGCTGATGGAGTCCAAGGACACTTGGCTAGATATGGCAAAG
AACGAGGAGGACATCCGGGAACAACAACAGCAGATAAGCGATCGCGTGTGCGCCTCGATA
GCACAAAAAATGCGTGAGACTTTGGGGCTGAAGGATAAAATGAACATGACCTTAGGACTA
ATGAGGAGAACTATCCACCGGTGCACGAAATTCAACCAGGAGATGTACATCACCCACGGC
CTCACCAAGGGTCCTCTGTCTAAAACTCACCTGGAGACTCGAGAGAAACTGGACAGACCT
CTGGTTCGTGTATACCAGAGACACGTGGGCACCCAACTCCCAGAAGCCACGCGCCTTGCC
CAGGGCACTGACAAGCTGCAGCGCCACATCTCCCTTGCGGAAAAGAATCTGAAGGAGCTC
CTCGCTGCGCGCAAGAACCTCACCTGGAGCCTGAACTGCAAGAAGATTGGGCATGAAGTG
GACGACAACGTGGTGCGCCTGCGCCTCCGCCAACGGCACCCACAAGTGTGCTACGAGCAA
GCGCAACGCCTAGTCAGCGACTGGGACCCACGCACGCCGCCGCGCTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61834615|ref|XP_607091.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61834615|ref|XP_607091.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               107-226, - strand, RNAz p=0.643558
               

               
               109-226, - strand, RNAz p=0.776698

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-226, - strand, RNAz p=0.643558
               

               
               109-226, - strand, RNAz p=0.776698

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               25-226, gnl|bosTau2|chr7 (8856346-8856546)
               

               
               25-226, gnl|canFam2|chr20 (50103797-50103587)
               

               
               25-226, gnl|echTel1|scaffold_167466 (925-717)
               

               
               25-226, gnl|hg17|chr19 (14992209-14992433)
               

               
               25-226, gnl|Hg17|chr19 (14992271-14992471)
               

               
               25-226, gnl|loxAfr1|scaffold_172624 (111-340)
               

               
               25-226, gnl|mm7|chr10 (78403972-78403771)
               

               
               25-226, gnl|Mm7|chr10 (78403931-78403731)
               

               
               25-226, gnl|monDom2|scaffold_100 (525698-525921)
               

               
               25-226, gnl|panTro1|chr20 (15628742-15628966)
               

               
               25-226, gnl|rn3|chr7 (12456678-12456905)
               


               
               570-825, gnl|bosTau2|chr7 (8858026-8858283)
               

               
               570-825, gnl|Hg17|chr19 (14994656-14994907)
               

               
               570-825, gnl|Mm7|chr10 (78401942-78401680)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-226, gnl|bosTau2|chr7 (8856346-8856546)
               

               
               25-226, gnl|canFam2|chr20 (50103797-50103587)
               

               
               25-226, gnl|echTel1|scaffold_167466 (925-717)
               

               
               25-226, gnl|hg17|chr19 (14992209-14992433)
               

               
               25-226, gnl|Hg17|chr19 (14992271-14992471)
               

               
               25-226, gnl|loxAfr1|scaffold_172624 (111-340)
               

               
               25-226, gnl|mm7|chr10 (78403972-78403771)
               

               
               25-226, gnl|Mm7|chr10 (78403931-78403731)
               

               
               25-226, gnl|monDom2|scaffold_100 (525698-525921)
               

               
               25-226, gnl|panTro1|chr20 (15628742-15628966)
               

               
               25-226, gnl|rn3|chr7 (12456678-12456905)
               


               
               570-825, gnl|bosTau2|chr7 (8858026-8858283)
               

               
               570-825, gnl|Hg17|chr19 (14994656-14994907)
               

               
               570-825, gnl|Mm7|chr10 (78401942-78401680)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               hyp (0.142837)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               hyp (0.142837)

	107-226, - strand, RNAz p=0.643558
	109-226, - strand, RNAz p=0.776698

	25-226, gnl\|bosTau2\|chr7 (8856346-8856546)
	25-226, gnl\|canFam2\|chr20 (50103797-50103587)
	25-226, gnl\|echTel1\|scaffold_167466 (925-717)
	25-226, gnl\|hg17\|chr19 (14992209-14992433)
	25-226, gnl\|Hg17\|chr19 (14992271-14992471)
	25-226, gnl\|loxAfr1\|scaffold_172624 (111-340)
	25-226, gnl\|mm7\|chr10 (78403972-78403771)
	25-226, gnl\|Mm7\|chr10 (78403931-78403731)
	25-226, gnl\|monDom2\|scaffold_100 (525698-525921)
	25-226, gnl\|panTro1\|chr20 (15628742-15628966)
	25-226, gnl\|rn3\|chr7 (12456678-12456905)

	570-825, gnl\|bosTau2\|chr7 (8858026-8858283)
	570-825, gnl\|Hg17\|chr19 (14994656-14994907)
	570-825, gnl\|Mm7\|chr10 (78401942-78401680)