Non-Coding RNA Search

Ss1.1-rtes27_i11.5

Sequence:


               
               CAACACTTTAAATTCATCATTGTCAAGAAGAAATATGGTGTTGTCATAATGTTTCTATGC
ATTTCTGCAAACCTACTGGATTATTATGATTATTCAGAGTCAAGCAGAACCCACAGCCTT
ATATTACACCTATCTGCACCATGAGAGACTCTAAAAAGGGAAGTATGTCTCTTCTATCCT
GATTTGACTTCATTTATCATAAAGTTTGGATATTAATTTCAAGAGAAGTTGAAATAGTGG
GAGATGGAGAAGAATGATTGTTTTTCCCACTCTATCCATTGCTAATCTTCCTCATACCAA
ACCATAAAAGAACTGAAAAAGGAAGTCCAAAATATGTAACTAATGACTGAAAAACTTTCC
ATCATAATTATGTTCAGAGGGTCATTGACAGATACCAGCAATATATACTGGAGCAACTGT
GGATTCTCCCTCAAATCAAAGGTCTCTAAGGACTTTCCTGCTGGCTATCTCTGGAGCAAA
AAAAAAAAAACCATCCCTCCGGATCACTTAAGCATGTCCTTAGAATGAAGTCTAGAAAGA
TCTTTTAAGGATGCTACAAGATCATCTGACATACTGCTACAGTCTCTTCTTTCTGAGAAC
ATATGAAATGAGAATTTCAAGACTGACTGGAGATTAGATCAATTTTTTTTTAAATGTGAC
AAGGAGTGGCATCATAAGTTCAGAACTTCACCAAACTTGGAGCTTCTTTCACGTCTTTCA
CTTTAGGAGGATGTGAACCTGGGACTTTTGTTGATTCTAGGCCATAAATTATCAAAAAGA
TCAGGGACTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACACTTTAAATTCATCATTGTCAAGAAGAAATATGGTGTTGTCATAATGTTTCTATGC
ATTTCTGCAAACCTACTGGATTATTATGATTATTCAGAGTCAAGCAGAACCCACAGCCTT
ATATTACACCTATCTGCACCATGAGAGACTCTAAAAAGGGAAGTATGTCTCTTCTATCCT
GATTTGACTTCATTTATCATAAAGTTTGGATATTAATTTCAAGAGAAGTTGAAATAGTGG
GAGATGGAGAAGAATGATTGTTTTTCCCACTCTATCCATTGCTAATCTTCCTCATACCAA
ACCATAAAAGAACTGAAAAAGGAAGTCCAAAATATGTAACTAATGACTGAAAAACTTTCC
ATCATAATTATGTTCAGAGGGTCATTGACAGATACCAGCAATATATACTGGAGCAACTGT
GGATTCTCCCTCAAATCAAAGGTCTCTAAGGACTTTCCTGCTGGCTATCTCTGGAGCAAA
AAAAAAAAAACCATCCCTCCGGATCACTTAAGCATGTCCTTAGAATGAAGTCTAGAAAGA
TCTTTTAAGGATGCTACAAGATCATCTGACATACTGCTACAGTCTCTTCTTTCTGAGAAC
ATATGAAATGAGAATTTCAAGACTGACTGGAGATTAGATCAATTTTTTTTTAAATGTGAC
AAGGAGTGGCATCATAAGTTCAGAACTTCACCAAACTTGGAGCTTCTTTCACGTCTTTCA
CTTTAGGAGGATGTGAACCTGGGACTTTTGTTGATTCTAGGCCATAAATTATCAAAAAGA
TCAGGGACTGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               443-555, + strand, RNAz p=0.819084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               443-555, + strand, RNAz p=0.819084

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024769, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024769, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-790, gnl|bosTau2|chr15 (23825472-23824665)
               

               
               1-790, gnl|Hg17|chr11 (122449048-122448097)
               

               
               1-790, gnl|Mm7|chr9 (40713335-40714137)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-790, gnl|bosTau2|chr15 (23825472-23824665)
               

               
               1-790, gnl|Hg17|chr11 (122449048-122448097)
               

               
               1-790, gnl|Mm7|chr9 (40713335-40714137)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               sto (0.179824)
               

               
               ova (0.129132)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               sto (0.179824)
               

               
               ova (0.129132)

	1-790, gnl\|bosTau2\|chr15 (23825472-23824665)
	1-790, gnl\|Hg17\|chr11 (122449048-122448097)
	1-790, gnl\|Mm7\|chr9 (40713335-40714137)