Non-Coding RNA Search

Ss1.1-rtes27_i17.5

Sequence:


               
               CATCAGTCTGAGAAGCTGCTATTTCAGCGACCCAGATTGGTCCATGAGGCCCACCCTGAC
GGAGCTCCTGCCCACCTTCCGGCACACTCTGCAGAAACTGACTTTCGAGTTTAACAACAA
CCATGAGTCTCTGGACGAGGAGCTGCACCTCCTCATCTTGTCCTGCAGGAAGCTGTTTTA
CTTCAAAATCTGGGCCTTCCTTGATGTTAAGTTTGTGGAGAGGATCCTGAAGAGTCAGGA
AGAAGGCCAGTGTGCCCTGCGCACGGCACAGGTGAGAATTTACACAAACAGATATGAGAC
GAATGAAGAGGACAGAACACTGCGGGAAATTTACAGGAAGTACAGAAAGATGATCGACTC
AGAGCTCAACTATTTTGTCATCGCTTACCCCATGATGTGACAAGCGCCCTCCAGCTCTCT
GGAGGAAGAGAGCCAGGAGCACTCTGAAGGTGACAATCCAGTCCTCAGAGAACGACCCCT
GGGGCACCCCCTACCCTCACCCCTTTTTCTTCTCTCTCTCCTTGTTGCCAGTTTCACACC
AACATGGCACCCCAGCTTCTACTGGGACACTGGTCATGTGGAGATCCCGACTGACTTTAA
AGTGCTGTCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCAGTCTGAGAAGCTGCTATTTCAGCGACCCAGATTGGTCCATGAGGCCCACCCTGAC
GGAGCTCCTGCCCACCTTCCGGCACACTCTGCAGAAACTGACTTTCGAGTTTAACAACAA
CCATGAGTCTCTGGACGAGGAGCTGCACCTCCTCATCTTGTCCTGCAGGAAGCTGTTTTA
CTTCAAAATCTGGGCCTTCCTTGATGTTAAGTTTGTGGAGAGGATCCTGAAGAGTCAGGA
AGAAGGCCAGTGTGCCCTGCGCACGGCACAGGTGAGAATTTACACAAACAGATATGAGAC
GAATGAAGAGGACAGAACACTGCGGGAAATTTACAGGAAGTACAGAAAGATGATCGACTC
AGAGCTCAACTATTTTGTCATCGCTTACCCCATGATGTGACAAGCGCCCTCCAGCTCTCT
GGAGGAAGAGAGCCAGGAGCACTCTGAAGGTGACAATCCAGTCCTCAGAGAACGACCCCT
GGGGCACCCCCTACCCTCACCCCTTTTTCTTCTCTCTCTCCTTGTTGCCAGTTTCACACC
AACATGGCACCCCAGCTTCTACTGGGACACTGGTCATGTGGAGATCCCGACTGACTTTAA
AGTGCTGTCTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61858192|ref|XP_610340.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61858192|ref|XP_610340.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               464-576, - strand, RNAz p=0.79439

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-576, - strand, RNAz p=0.79439

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               265-612, gnl|bosTau2|chr19 (19728223-19727885)
               

               
               265-612, gnl|canFam2|chr5 (33613083-33612756)
               

               
               265-612, gnl|echTel1|scaffold_190756 (4666-5028)
               

               
               265-612, gnl|hg17|chr17 (6631292-6631715)
               

               
               265-612, gnl|Hg17|chr17 (6631336-6631681)
               

               
               265-612, gnl|loxAfr1|scaffold_18069 (4388-4791)
               

               
               265-612, gnl|mm7|chr11 (72400623-72401016)
               

               
               265-612, gnl|Mm7|chr11 (72400650-72400986)
               

               
               265-612, gnl|panTro1|chr19_random (45157418-45156978)
               

               
               265-612, gnl|rheMac2|chr16 (6496246-6496670)
               

               
               265-612, gnl|rn3|chr10 (59215956-59216330)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-612, gnl|bosTau2|chr19 (19728223-19727885)
               

               
               265-612, gnl|canFam2|chr5 (33613083-33612756)
               

               
               265-612, gnl|echTel1|scaffold_190756 (4666-5028)
               

               
               265-612, gnl|hg17|chr17 (6631292-6631715)
               

               
               265-612, gnl|Hg17|chr17 (6631336-6631681)
               

               
               265-612, gnl|loxAfr1|scaffold_18069 (4388-4791)
               

               
               265-612, gnl|mm7|chr11 (72400623-72401016)
               

               
               265-612, gnl|Mm7|chr11 (72400650-72400986)
               

               
               265-612, gnl|panTro1|chr19_random (45157418-45156978)
               

               
               265-612, gnl|rheMac2|chr16 (6496246-6496670)
               

               
               265-612, gnl|rn3|chr10 (59215956-59216330)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               tes (0.415628)
               

               
               cte (0.29274)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               cte (0.29274)
               

               
               cty (0.10408)

	265-612, gnl\|bosTau2\|chr19 (19728223-19727885)
	265-612, gnl\|canFam2\|chr5 (33613083-33612756)
	265-612, gnl\|echTel1\|scaffold_190756 (4666-5028)
	265-612, gnl\|hg17\|chr17 (6631292-6631715)
	265-612, gnl\|Hg17\|chr17 (6631336-6631681)
	265-612, gnl\|loxAfr1\|scaffold_18069 (4388-4791)
	265-612, gnl\|mm7\|chr11 (72400623-72401016)
	265-612, gnl\|Mm7\|chr11 (72400650-72400986)
	265-612, gnl\|panTro1\|chr19_random (45157418-45156978)
	265-612, gnl\|rheMac2\|chr16 (6496246-6496670)
	265-612, gnl\|rn3\|chr10 (59215956-59216330)