Non-Coding RNA Search

Ss1.1-rtes27_i5.5

Sequence:


               
               TACTCAAAGATAAGAAGGAGAAAGAAGACGTGTTGGACAATACATCAGCAAAGGAGAAGG
AAGCGACAAGGAGAGTGAGAGATGAACCCGAGAAGGTGATGAAGCGGTGGGAGCACGAGC
AAATGGAGAATGAGAAAGAGATGGAAGGTGACCTGTCTAAGGACACCCTGGTGGACCGCA
GCCAGTGGACAAAAGGACATGAGCAGAGAGGAGCCATAGAAAAAGCCAGCCCCTTAAGGA
GAACAGAACAGGCAGCGATGTGGGAGGGATCCAGGAGAGGCTGCCAAAGAACACTTGGGA
GAAGCAGGCAGAACACTATCCGAACTGAAGAGAGGAGAAACGAGAGAAATTTACAGGAGG
CCTTCAGATCTGGACCAAAACCTCTCAGAGGAATTAAGCACAAGGGAACCGGAAGTCCTG
GAGAAGAAACTTTCAGAAACTGGCAGAGGAGAGTCGGAAAGGTTGGAGAAAACAGAATCG
GAAGAAATAGGGGAAACGGAAAACACTGAAGAAATGAGAAAAGACGAGAAGGAAGATGAG
TTAGCCCTGGAGTAGGCATTAGGATCAGGATGCTGGGGTTCACAGGGACCGTGGAGGTCT
TACTAAACCGGACCTTCACGCTGAGTTGTCTCTGCTAGAAAAACACATGGACTGGGTCCC
CCAGGTCATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTCAAAGATAAGAAGGAGAAAGAAGACGTGTTGGACAATACATCAGCAAAGGAGAAGG
AAGCGACAAGGAGAGTGAGAGATGAACCCGAGAAGGTGATGAAGCGGTGGGAGCACGAGC
AAATGGAGAATGAGAAAGAGATGGAAGGTGACCTGTCTAAGGACACCCTGGTGGACCGCA
GCCAGTGGACAAAAGGACATGAGCAGAGAGGAGCCATAGAAAAAGCCAGCCCCTTAAGGA
GAACAGAACAGGCAGCGATGTGGGAGGGATCCAGGAGAGGCTGCCAAAGAACACTTGGGA
GAAGCAGGCAGAACACTATCCGAACTGAAGAGAGGAGAAACGAGAGAAATTTACAGGAGG
CCTTCAGATCTGGACCAAAACCTCTCAGAGGAATTAAGCACAAGGGAACCGGAAGTCCTG
GAGAAGAAACTTTCAGAAACTGGCAGAGGAGAGTCGGAAAGGTTGGAGAAAACAGAATCG
GAAGAAATAGGGGAAACGGAAAACACTGAAGAAATGAGAAAAGACGAGAAGGAAGATGAG
TTAGCCCTGGAGTAGGCATTAGGATCAGGATGCTGGGGTTCACAGGGACCGTGGAGGTCT
TACTAAACCGGACCTTCACGCTGAGTTGTCTCTGCTAGAAAAACACATGGACTGGGTCCC
CCAGGTCATCTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               46-668, gnl|bosTau2|chr23 (29770-29175)
               

               
               46-668, gnl|Hg17|chr17 (37370564-37371138)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-668, gnl|bosTau2|chr23 (29770-29175)
               

               
               46-668, gnl|Hg17|chr17 (37370564-37371138)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               cki (0.165235)
               

               
               pgl (0.118483)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cmu (0.186393)
               

               
               cki (0.165235)
               

               
               pgl (0.118483)

	46-668, gnl\|bosTau2\|chr23 (29770-29175)
	46-668, gnl\|Hg17\|chr17 (37370564-37371138)

	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	cmu (0.186393)
	cki (0.165235)
	pgl (0.118483)