Non-Coding RNA Search

Ss1.1-rtes27_k17.5

Sequence:


               
               AGAATGGTGCAATGGGACATCCCATATGTGCCCAGATGATGTATATGTAGAGGATGGAAT
TCCCTGTAATAACAGTGCCTACTGCTATGAAAAGAGATGTAATGACCGCAATACACAGTG
TAGGCAGATTTTTGGCCAAGAGGCAAAAAATGCACAAAACATTTGCTACAAACAAGTAAA
TACTCAAGGTGATCGTTTTGGTAACTGTGGAGTTGAAGGCTCTTCATATCTAAAATGCAA
TATGTCAAATATCCTGTGTGGGAGAATTCAGTGCGATAACGTGACAGAAATTCCCCTTCT
GAGAGAGCATTCTACTGTGCATGGGACACGCTTCAAGGACGTCACCTGCTGGGGTACAGA
CTACCATATTGGGATGACCATACCTGATATTGGTGAAGTGAAAGATGGTACTGAGTGTGG
CCAAGAACATGTCTGCATCCAAAGGAAGTGTGTCCATCTCTCTCGCTTGGACAGTAATTG
TTCACCTACGTTCTGTAACATGAGGGGGATCTGTAACAATAAACATCATTGCCATTGCAA
CTATAAGTGGGACCCTCCCAACTGCCTAATAAGAGGCGATGGAGGTAGTGTTGACAGCGG
ACCACCCCCTAGAAGAACGAGGATAAAGAAGATTTACCTCTTAATACCATGTCTTATTTT
GCTGTTACTTCTACTATGCTGTCTTCTTTTGCTTTGTATGAGGAAAAAACCTAAAGGACA
AAAGCAAAAAAGTCAGACTCAACCTGAAAAATCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATGGTGCAATGGGACATCCCATATGTGCCCAGATGATGTATATGTAGAGGATGGAAT
TCCCTGTAATAACAGTGCCTACTGCTATGAAAAGAGATGTAATGACCGCAATACACAGTG
TAGGCAGATTTTTGGCCAAGAGGCAAAAAATGCACAAAACATTTGCTACAAACAAGTAAA
TACTCAAGGTGATCGTTTTGGTAACTGTGGAGTTGAAGGCTCTTCATATCTAAAATGCAA
TATGTCAAATATCCTGTGTGGGAGAATTCAGTGCGATAACGTGACAGAAATTCCCCTTCT
GAGAGAGCATTCTACTGTGCATGGGACACGCTTCAAGGACGTCACCTGCTGGGGTACAGA
CTACCATATTGGGATGACCATACCTGATATTGGTGAAGTGAAAGATGGTACTGAGTGTGG
CCAAGAACATGTCTGCATCCAAAGGAAGTGTGTCCATCTCTCTCGCTTGGACAGTAATTG
TTCACCTACGTTCTGTAACATGAGGGGGATCTGTAACAATAAACATCATTGCCATTGCAA
CTATAAGTGGGACCCTCCCAACTGCCTAATAAGAGGCGATGGAGGTAGTGTTGACAGCGG
ACCACCCCCTAGAAGAACGAGGATAAAGAAGATTTACCTCTTAATACCATGTCTTATTTT
GCTGTTACTTCTACTATGCTGTCTTCTTTTGCTTTGTATGAGGAAAAAACCTAAAGGACA
AAAGCAAAAAAGTCAGACTCAACCTGAAAAATCCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61823689|ref|XP_604200.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823689|ref|XP_604200.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-390, gnl|bosTau2|chr10 (57467997-57468386)
               

               
               1-390, gnl|canFam2|chr8 (47273350-47273769)
               

               
               1-390, gnl|dasNov1|scaffold_20458 (20909-21340)
               

               
               1-390, gnl|echTel1|scaffold_289219 (31775-31356)
               

               
               1-390, gnl|galGal2|chrUn (140105550-140105128)
               

               
               1-390, gnl|hg17|chr14 (69782207-69782624)
               

               
               1-390, gnl|Hg17|chr14 (69995391-69995771)
               

               
               1-390, gnl|loxAfr1|scaffold_42830 (1180-761)
               

               
               1-390, gnl|mm7|chr12 (79520792-79521211)
               

               
               1-390, gnl|Mm7|chr12 (79521296-79520909)
               

               
               1-390, gnl|monDom2|scaffold_8 (65392795-65392376)
               

               
               1-390, gnl|oryCun1|scaffold_198351 (44710-45129)
               

               
               1-390, gnl|panTro1|chr15 (69467694-69468112)
               

               
               1-390, gnl|rheMac2|chr7 (133371006-133371424)
               

               
               1-390, gnl|rn3|chr6 (105422736-105423155)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-390, gnl|bosTau2|chr10 (57467997-57468386)
               

               
               1-390, gnl|canFam2|chr8 (47273350-47273769)
               

               
               1-390, gnl|dasNov1|scaffold_20458 (20909-21340)
               

               
               1-390, gnl|echTel1|scaffold_289219 (31775-31356)
               

               
               1-390, gnl|galGal2|chrUn (140105550-140105128)
               

               
               1-390, gnl|hg17|chr14 (69782207-69782624)
               

               
               1-390, gnl|Hg17|chr14 (69995391-69995771)
               

               
               1-390, gnl|loxAfr1|scaffold_42830 (1180-761)
               

               
               1-390, gnl|mm7|chr12 (79520792-79521211)
               

               
               1-390, gnl|Mm7|chr12 (79521296-79520909)
               

               
               1-390, gnl|monDom2|scaffold_8 (65392795-65392376)
               

               
               1-390, gnl|oryCun1|scaffold_198351 (44710-45129)
               

               
               1-390, gnl|panTro1|chr15 (69467694-69468112)
               

               
               1-390, gnl|rheMac2|chr7 (133371006-133371424)
               

               
               1-390, gnl|rn3|chr6 (105422736-105423155)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-390, gnl\|bosTau2\|chr10 (57467997-57468386)
	1-390, gnl\|canFam2\|chr8 (47273350-47273769)
	1-390, gnl\|dasNov1\|scaffold_20458 (20909-21340)
	1-390, gnl\|echTel1\|scaffold_289219 (31775-31356)
	1-390, gnl\|galGal2\|chrUn (140105550-140105128)
	1-390, gnl\|hg17\|chr14 (69782207-69782624)
	1-390, gnl\|Hg17\|chr14 (69995391-69995771)
	1-390, gnl\|loxAfr1\|scaffold_42830 (1180-761)
	1-390, gnl\|mm7\|chr12 (79520792-79521211)
	1-390, gnl\|Mm7\|chr12 (79521296-79520909)
	1-390, gnl\|monDom2\|scaffold_8 (65392795-65392376)
	1-390, gnl\|oryCun1\|scaffold_198351 (44710-45129)
	1-390, gnl\|panTro1\|chr15 (69467694-69468112)
	1-390, gnl\|rheMac2\|chr7 (133371006-133371424)
	1-390, gnl\|rn3\|chr6 (105422736-105423155)