Non-Coding RNA Search

Ss1.1-rtes27_k19.5

Sequence:


               
               TCGCGATCTAGAACTAGTCAATGATGCTGAGATATTTTAGATTGCATCCATCAAAGTTTC
CTCTTAGGTTTAATGAGTTTTCTGCCTTTTGGCGTCCTTTTGGAATCACAGAAATAAACA
AGTAGGTTTCAGTTGTCTTAAGAGACAAACGTTAATCAGGAATACAGAGTACAGGTCTTA
CATTTTAGAGGAAGAGCACCTTGTATAGTAAGTCCAAGTCAAGCAAGACTTTGTGAATTT
GTGACAAGTTTGCACTTAGAAAATCATGTAAATATGTCACATCTTGTTTTAACATTTTCC
CAGGTGTTTAGGTAATAATGCATTACTTTGACTTCAGATTGATGTTCCACGTCACGTGAC
TCTGAGAAGTTGACTGCCGTACGTGGTGAAAGGAAGCGATTTCCCTTCTGCCCTTTCCTA
AGAGGCTAGGAGAAGGAAGGAGCAGAGGATGGTCTGAAGAAATGACCGTTCATGCTGATT
ACGTCTTGACAGTCTGACCGCAGGCTTTACATAGATTATTCAGCCTTCGCAGGATTTGCA
TTCAGGGTTTATTTTACTCAGTCCCTTTACCTTAGATGGAACCTTCTTAAGTTCAGATTT
TTGATATAAGGTCGTGTTTCAGACTCTGAAAGTTCTGGCTTGGTTCTTGGCTTCCGTAAA
CAAGTGCTATTGCCAGGCACTCTGATTGCAATTTGTGGATCCCTGCTGTTCCCTCATCCC
ACACCCCTGCCTTGCAGCAAGGAATGTGGTCCATGAAAGGTATGCCTTGCTGTGGGCCCC
TTGTGTGACCGTCACCTGTTCAGGACAGCAGTTCCAGCAATAATGTCCAAGGATGTAGTC
CTTCATGGGAGCTTACAAACAAGTTTAAAATATTAGTAGAAAATGAACAGAAAAGTGTTG
GTGATGGGGTGATTTGAACTATATGTTTTGTTGGGTAAGTGGAGTAAAGTTGCAGAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCGATCTAGAACTAGTCAATGATGCTGAGATATTTTAGATTGCATCCATCAAAGTTTC
CTCTTAGGTTTAATGAGTTTTCTGCCTTTTGGCGTCCTTTTGGAATCACAGAAATAAACA
AGTAGGTTTCAGTTGTCTTAAGAGACAAACGTTAATCAGGAATACAGAGTACAGGTCTTA
CATTTTAGAGGAAGAGCACCTTGTATAGTAAGTCCAAGTCAAGCAAGACTTTGTGAATTT
GTGACAAGTTTGCACTTAGAAAATCATGTAAATATGTCACATCTTGTTTTAACATTTTCC
CAGGTGTTTAGGTAATAATGCATTACTTTGACTTCAGATTGATGTTCCACGTCACGTGAC
TCTGAGAAGTTGACTGCCGTACGTGGTGAAAGGAAGCGATTTCCCTTCTGCCCTTTCCTA
AGAGGCTAGGAGAAGGAAGGAGCAGAGGATGGTCTGAAGAAATGACCGTTCATGCTGATT
ACGTCTTGACAGTCTGACCGCAGGCTTTACATAGATTATTCAGCCTTCGCAGGATTTGCA
TTCAGGGTTTATTTTACTCAGTCCCTTTACCTTAGATGGAACCTTCTTAAGTTCAGATTT
TTGATATAAGGTCGTGTTTCAGACTCTGAAAGTTCTGGCTTGGTTCTTGGCTTCCGTAAA
CAAGTGCTATTGCCAGGCACTCTGATTGCAATTTGTGGATCCCTGCTGTTCCCTCATCCC
ACACCCCTGCCTTGCAGCAAGGAATGTGGTCCATGAAAGGTATGCCTTGCTGTGGGCCCC
TTGTGTGACCGTCACCTGTTCAGGACAGCAGTTCCAGCAATAATGTCCAAGGATGTAGTC
CTTCATGGGAGCTTACAAACAAGTTTAAAATATTAGTAGAAAATGAACAGAAAAGTGTTG
GTGATGGGGTGATTTGAACTATATGTTTTGTTGGGTAAGTGGAGTAAAGTTGCAGAAACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               124-314, - strand, RNAz p=0.871492
               

               
               354-472, + strand, RNAz p=0.952808

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-314, - strand, RNAz p=0.871492
               

               
               354-472, + strand, RNAz p=0.952808

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB084281, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB084281, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               87-916, gnl|bosTau2|chr11 (54375967-54375148)
               

               
               87-916, gnl|Hg17|chr2 (25876489-25875619)
               

               
               87-916, gnl|Mm7|chr12 (3420895-3421645)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-916, gnl|bosTau2|chr11 (54375967-54375148)
               

               
               87-916, gnl|Hg17|chr2 (25876489-25875619)
               

               
               87-916, gnl|Mm7|chr12 (3420895-3421645)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	124-314, - strand, RNAz p=0.871492
	354-472, + strand, RNAz p=0.952808

	87-916, gnl\|bosTau2\|chr11 (54375967-54375148)
	87-916, gnl\|Hg17\|chr2 (25876489-25875619)
	87-916, gnl\|Mm7\|chr12 (3420895-3421645)