Non-Coding RNA Search

Ss1.1-rtes27_m3.5

Sequence:


               
               AAACGCAGCTTCAACTGCAGCAACTAGTGCGGCTCAGAATGCTTTCAAGGGTAACCAGAT
TTAGAGAGTCTTCAAATAATACACTGTTACCTTTTGACTGTACTTTTTTCTCCAGTTACT
GTATTCTATAAATATTTTTTTGTTCAAAACACACAGTACACACAGCACGTATATTTCCTA
ATCACTTGTGCATGGGCTAAAACCAGAAAAACTTCGTTGTCTTATTATTTACCTGACAGT
TTCTTAATCTTTCAGTGCCCCTTGCAGGAAAAAAAAATTACATGCTAAATAAATATTCTC
CATATTTTTTGGGGGATGAATGTTCAGCAAATTTTTTCGGTGGTGACACACTGAAATCGA
CATGGCATTTAGGATTAAAAATGCACTTAGTACTTGCTGCAGTCATTCTTTCAAGAGTCT
TAGACATAAGGATTACACACTGGAGCAGTAAAGCAATGCTTCATTCCTTTTCTTTATTTG
TATTGAAAGAAATAGGACATCAGAAACTTAGGGACTTTTAAATTGGCTTGCTTTTTAGCA
GTTTCAGTCACCAGTGAAGAGCCTATGTGCATTTCATAGTAGATAATGTAAATTTTATCT
TTTTATTTTCTTTTTCTAGAGTAATTGATATTTTGATATCAATCTCTGATCTTGCATGGG
CACCATGTTTCCTAAAAAAAAATAGTATTTTGGGTTATGCACTGCTTCTGGTTGTAGGAT
TGGGGAGTTTGTAGAATCATAAAAATGATTTTCTGTAATTGTTTCTTTTAAATAAAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACGCAGCTTCAACTGCAGCAACTAGTGCGGCTCAGAATGCTTTCAAGGGTAACCAGAT
TTAGAGAGTCTTCAAATAATACACTGTTACCTTTTGACTGTACTTTTTTCTCCAGTTACT
GTATTCTATAAATATTTTTTTGTTCAAAACACACAGTACACACAGCACGTATATTTCCTA
ATCACTTGTGCATGGGCTAAAACCAGAAAAACTTCGTTGTCTTATTATTTACCTGACAGT
TTCTTAATCTTTCAGTGCCCCTTGCAGGAAAAAAAAATTACATGCTAAATAAATATTCTC
CATATTTTTTGGGGGATGAATGTTCAGCAAATTTTTTCGGTGGTGACACACTGAAATCGA
CATGGCATTTAGGATTAAAAATGCACTTAGTACTTGCTGCAGTCATTCTTTCAAGAGTCT
TAGACATAAGGATTACACACTGGAGCAGTAAAGCAATGCTTCATTCCTTTTCTTTATTTG
TATTGAAAGAAATAGGACATCAGAAACTTAGGGACTTTTAAATTGGCTTGCTTTTTAGCA
GTTTCAGTCACCAGTGAAGAGCCTATGTGCATTTCATAGTAGATAATGTAAATTTTATCT
TTTTATTTTCTTTTTCTAGAGTAATTGATATTTTGATATCAATCTCTGATCTTGCATGGG
CACCATGTTTCCTAAAAAAAAATAGTATTTTGGGTTATGCACTGCTTCTGGTTGTAGGAT
TGGGGAGTTTGTAGAATCATAAAAATGATTTTCTGTAATTGTTTCTTTTAAATAAAAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               236-393, + strand, RNAz p=0.997042

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-393, + strand, RNAz p=0.997042

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC009787, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC009787, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-779, gnl|bosTau2|chr10 (3555596-3556372)
               

               
               1-779, gnl|Hg17|chr5 (77807184-77807966)
               

               
               1-779, gnl|Mm7|chr13 (91267052-91266268)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-779, gnl|bosTau2|chr10 (3555596-3556372)
               

               
               1-779, gnl|Hg17|chr5 (77807184-77807966)
               

               
               1-779, gnl|Mm7|chr13 (91267052-91266268)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-779, gnl\|bosTau2\|chr10 (3555596-3556372)
	1-779, gnl\|Hg17\|chr5 (77807184-77807966)
	1-779, gnl\|Mm7\|chr13 (91267052-91266268)