Non-Coding RNA Search

Ss1.1-rtes29_g9.5

Sequence:


               
               AAGAGTTCCAGTGCGGTTGTTGGGCATTATACCCAGCTTGTTTGGTACTCATCTTACCGC
GTTGGATGTGGAATCGCCTATTGTCCCAATCAAGAGAACCTAAAATACTACTATGTTTGC
CAATACTGTCCTGCTGGTAATAATGTGAGTAAAAAGAATACCCCTTACAAAGAAGGAACA
CCTTGTGCCAGTTGCCCTGGTGACTGTGACGATGGACTATGCACCAATACTTGCCAGTAT
GAAGATCTCCTTAGTAACTGTGATTCCTTGAAGAAAACAGCCGGCTGTGGACATGAACTG
CTTAAGGAAAAGTGCAAGGCTACTTGCTTATGTGAAGGCAAAATCTACTGAAATGCCCTG
TTTGCTCTGTACAGGACTAAGTGGAGAAAAGCTATCTCATTTAGTTGACCCAAACCAGGA
GGGAAATGGTAGGCATGTTAGTTACCAACAGTAATGCACCTTTTCCTCCTGAATATTTAT
AGAGACCGCCTTCATACCACGATGTACAAAAGCAGCATAGTCTATGGTGACAACTTCGGA
CCGATACAAATTTGTTAGCTGACATTTAATTAATTGAATCAAGCTGAGGACTTTGAAAGT
TGTAGAACCACAGGACATGGTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGTTCCAGTGCGGTTGTTGGGCATTATACCCAGCTTGTTTGGTACTCATCTTACCGC
GTTGGATGTGGAATCGCCTATTGTCCCAATCAAGAGAACCTAAAATACTACTATGTTTGC
CAATACTGTCCTGCTGGTAATAATGTGAGTAAAAAGAATACCCCTTACAAAGAAGGAACA
CCTTGTGCCAGTTGCCCTGGTGACTGTGACGATGGACTATGCACCAATACTTGCCAGTAT
GAAGATCTCCTTAGTAACTGTGATTCCTTGAAGAAAACAGCCGGCTGTGGACATGAACTG
CTTAAGGAAAAGTGCAAGGCTACTTGCTTATGTGAAGGCAAAATCTACTGAAATGCCCTG
TTTGCTCTGTACAGGACTAAGTGGAGAAAAGCTATCTCATTTAGTTGACCCAAACCAGGA
GGGAAATGGTAGGCATGTTAGTTACCAACAGTAATGCACCTTTTCCTCCTGAATATTTAT
AGAGACCGCCTTCATACCACGATGTACAAAAGCAGCATAGTCTATGGTGACAACTTCGGA
CCGATACAAATTTGTTAGCTGACATTTAATTAATTGAATCAAGCTGAGGACTTTGAAAGT
TGTAGAACCACAGGACATGGTCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7768109|emb|CAB90615.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7768109|emb|CAB90615.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               224-622, gnl|bosTau2|chr23 (19745384-19745793)
               

               
               224-622, gnl|canFam2|chr12 (20536611-20537023)
               

               
               224-622, gnl|echTel1|scaffold_290727 (12392-12758)
               

               
               224-622, gnl|hg17|chr6 (49768089-49768470)
               

               
               224-622, gnl|Hg17|chr6 (49768572-49768156)
               

               
               224-622, gnl|loxAfr1|scaffold_27537 (13223-12794)
               

               
               224-622, gnl|mm7|chr17 (38805498-38805884)
               

               
               224-622, gnl|Mm7|chr17 (38805986-38805577)
               

               
               224-622, gnl|oryCun1|scaffold_110989 (17295-16898)
               

               
               224-622, gnl|panTro1|chr5 (50569716-50570097)
               

               
               224-622, gnl|rheMac2|chr4 (49409881-49410288)
               

               
               224-622, gnl|rn3|chr9 (16269160-16268778)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               224-622, gnl|bosTau2|chr23 (19745384-19745793)
               

               
               224-622, gnl|canFam2|chr12 (20536611-20537023)
               

               
               224-622, gnl|echTel1|scaffold_290727 (12392-12758)
               

               
               224-622, gnl|hg17|chr6 (49768089-49768470)
               

               
               224-622, gnl|Hg17|chr6 (49768572-49768156)
               

               
               224-622, gnl|loxAfr1|scaffold_27537 (13223-12794)
               

               
               224-622, gnl|mm7|chr17 (38805498-38805884)
               

               
               224-622, gnl|Mm7|chr17 (38805986-38805577)
               

               
               224-622, gnl|oryCun1|scaffold_110989 (17295-16898)
               

               
               224-622, gnl|panTro1|chr5 (50569716-50570097)
               

               
               224-622, gnl|rheMac2|chr4 (49409881-49410288)
               

               
               224-622, gnl|rn3|chr9 (16269160-16268778)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (2.70158)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (2.70158)

	224-622, gnl\|bosTau2\|chr23 (19745384-19745793)
	224-622, gnl\|canFam2\|chr12 (20536611-20537023)
	224-622, gnl\|echTel1\|scaffold_290727 (12392-12758)
	224-622, gnl\|hg17\|chr6 (49768089-49768470)
	224-622, gnl\|Hg17\|chr6 (49768572-49768156)
	224-622, gnl\|loxAfr1\|scaffold_27537 (13223-12794)
	224-622, gnl\|mm7\|chr17 (38805498-38805884)
	224-622, gnl\|Mm7\|chr17 (38805986-38805577)
	224-622, gnl\|oryCun1\|scaffold_110989 (17295-16898)
	224-622, gnl\|panTro1\|chr5 (50569716-50570097)
	224-622, gnl\|rheMac2\|chr4 (49409881-49410288)
	224-622, gnl\|rn3\|chr9 (16269160-16268778)