Ss1.1-rtes29_j5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACGTTTTCTGTAGAAAATGTTTCCTGACTGCAATGAGAGAAAGCGGAATACATTGTCC CCTCTGTCGTGGAAATGTGACTAGAAGAGAGAGAGCATGTCCTGAACGAGCCTTAGACCT TGAAAATATCATGAGGAAGTTTTCTGGTAGTTGCAGATGCTGTGCAAAACAGATTAAATT CTATCGTATGAGACATCATTACAAATCTTGTAAGAAGTATCAAGATGAATACGGTGTTTC CTCTATCATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGGAACAGTAATAGGAGTGA AACATCCACATCTGACAACACAGAAACTTACCAAGAGAATACAAGTTCTTCTGGACATCC CACTTTTAAGTGTCCCTTGTGTCAAGAATCAAATTTTACCAGACAGCGTTTACTGGACCA CTGTAACAGTAATCACCTATTTCAGATAGTTCCTGTGACATGTCCTATTTGTGTGTCTCT TCCTTGGGGAGATCCTAGCCAGATTACTAGAAATTTCGTTAGTCATCTAAATCAAAGACA TCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAGGAAACGCAATATCAAAC TGCTGTTGAAGAATCTTTTCAAGTAAACATCTGAAGGCTGTAGACATCTCTGCATCTTTG TACCTGCAAGTGCCATCTTTAAGGAGAAAACTACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACGTTTTCTGTAGAAAATGTTTCCTGACTGCAATGAGAGAAAGCGGAATACATTGTCC CCTCTGTCGTGGAAATGTGACTAGAAGAGAGAGAGCATGTCCTGAACGAGCCTTAGACCT TGAAAATATCATGAGGAAGTTTTCTGGTAGTTGCAGATGCTGTGCAAAACAGATTAAATT CTATCGTATGAGACATCATTACAAATCTTGTAAGAAGTATCAAGATGAATACGGTGTTTC CTCTATCATTCCAAACTTTCAGATCTCTCAAGATTCAGTAGGGAACAGTAATAGGAGTGA AACATCCACATCTGACAACACAGAAACTTACCAAGAGAATACAAGTTCTTCTGGACATCC CACTTTTAAGTGTCCCTTGTGTCAAGAATCAAATTTTACCAGACAGCGTTTACTGGACCA CTGTAACAGTAATCACCTATTTCAGATAGTTCCTGTGACATGTCCTATTTGTGTGTCTCT TCCTTGGGGAGATCCTAGCCAGATTACTAGAAATTTCGTTAGTCATCTAAATCAAAGACA TCAGTTTGATTATGGAGAATTTGTGAATCTTCAGCTAGATGAGGAAACGCAATATCAAAC TGCTGTTGAAGAATCTTTTCAAGTAAACATCTGAAGGCTGTAGACATCTCTGCATCTTTG TACCTGCAAGTGCCATCTTTAAGGAGAAAACTACAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 7-172, gnl|bosTau2|chr24 (19698156-19697991) | |
| 7-172, gnl|canFam2|chr7 (60520105-60519927) | |
| 7-172, gnl|canFam2|chr7 (60519937-60520102) | |
| 7-172, gnl|dasNov1|scaffold_105141 (558-724) | |
| 7-172, gnl|dasNov1|scaffold_46092 (8996-9160) | |
| 7-172, gnl|echTel1|scaffold_315500 (13700-13879) | |
| 7-172, gnl|echTel1|scaffold_319615 (45924-45747) | |
| 7-172, gnl|galGal2|chr2 (105543059-105543237) | |
| 7-172, gnl|hg17|chr18 (27945713-27945891) | |
| 7-172, gnl|Hg17|chr18 (27945715-27945880) | |
| 7-172, gnl|hg17|chr5 (54862204-54862367) | |
| 7-172, gnl|loxAfr1|scaffold_48720 (14736-14558) | |
| 7-172, gnl|loxAfr1|scaffold_48720 (14568-14733) | |
| 7-172, gnl|mm7|chr18 (21379441-21379618) | |
| 7-172, gnl|mm7|chr18 (21379605-21379444) | |
| 7-172, gnl|Mm7|chr18 (21379443-21379608) | |
| 7-172, gnl|monDom2|scaffold_10 (24078065-24078230) | |
| 7-172, gnl|monDom2|scaffold_4 (123974152-123973973) | |
| 7-172, gnl|oryCun1|scaffold_178459 (21198-21020) | |
| 7-172, gnl|oryCun1|scaffold_178459 (21034-21195) | |
| 7-172, gnl|panTro1|chr17 (23853066-23853244) | |
| 7-172, gnl|panTro1|chr4_random (36384460-36384625) | |
| 7-172, gnl|rheMac2|chr18 (25050154-25050332) | |
| 7-172, gnl|rheMac2|chr18 (25050318-25050158) | |
| 7-172, gnl|rn3|chr3 (4859864-4859699) | |
| 7-172, gnl|rn3|chr3 (4859697-4859861) | |
| 344-457, gnl|bosTau2|chr24 (19687187-19687074) | |
| 344-457, gnl|canFam2|chr7 (60507243-60507157) | |
| 344-457, gnl|dasNov1|scaffold_46092 (8827-8738) | |
| 344-457, gnl|echTel1|scaffold_151832 (74-4) | |
| 344-457, gnl|galGal2|chr2 (105546307-105546396) | |
| 344-457, gnl|hg17|chr18 (27958694-27958783) | |
| 344-457, gnl|Hg17|chr18 (27958693-27958806) | |
| 344-457, gnl|loxAfr1|scaffold_48720 (9165-9076) | |
| 344-457, gnl|mm7|chr18 (21391605-21391694) | |
| 344-457, gnl|Mm7|chr18 (21391604-21391717) | |
| 344-457, gnl|monDom2|scaffold_4 (123961045-123960956) | |
| 344-457, gnl|oryCun1|scaffold_178459 (7631-7542) | |
| 344-457, gnl|panTro1|chr17 (23866150-23866239) | |
| 344-457, gnl|rheMac2|chr18 (25063139-25063228) | |
| 344-457, gnl|rn3|chr18 (12808467-12808556) | |
| 560-695, gnl|bosTau2|chr24 (19683818-19683683) | |
| 560-695, gnl|canFam2|chr7 (60503707-60503583) | |
| 560-695, gnl|dasNov1|scaffold_46092 (8609-8499) | |
| 560-695, gnl|echTel1|scaffold_315500 (25856-25980) | |
| 560-695, gnl|galGal2|chr2 (105548706-105548817) | |
| 560-695, gnl|hg17|chr18 (27963066-27963190) | |
| 560-695, gnl|Hg17|chr18 (27963074-27963209) | |
| 560-695, gnl|loxAfr1|scaffold_48720 (5326-5202) | |
| 560-695, gnl|mm7|chr18 (21396788-21396915) | |
| 560-695, gnl|Mm7|chr18 (21396795-21396931) | |
| 560-695, gnl|monDom2|scaffold_4 (123952381-123952260) | |
| 560-695, gnl|oryCun1|scaffold_178459 (2262-2138) | |
| 560-695, gnl|panTro1|chr17 (23870499-23870623) | |
| 560-695, gnl|rheMac2|chr18 (25067457-25067581) | |
| 560-695, gnl|rn3|chr18 (12813135-12813267) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-172, gnl|bosTau2|chr24 (19698156-19697991) | |
| 7-172, gnl|canFam2|chr7 (60520105-60519927) | |
| 7-172, gnl|canFam2|chr7 (60519937-60520102) | |
| 7-172, gnl|dasNov1|scaffold_105141 (558-724) | |
| 7-172, gnl|dasNov1|scaffold_46092 (8996-9160) | |
| 7-172, gnl|echTel1|scaffold_315500 (13700-13879) | |
| 7-172, gnl|echTel1|scaffold_319615 (45924-45747) | |
| 7-172, gnl|galGal2|chr2 (105543059-105543237) | |
| 7-172, gnl|hg17|chr18 (27945713-27945891) | |
| 7-172, gnl|Hg17|chr18 (27945715-27945880) | |
| 7-172, gnl|hg17|chr5 (54862204-54862367) | |
| 7-172, gnl|loxAfr1|scaffold_48720 (14736-14558) | |
| 7-172, gnl|loxAfr1|scaffold_48720 (14568-14733) | |
| 7-172, gnl|mm7|chr18 (21379441-21379618) | |
| 7-172, gnl|mm7|chr18 (21379605-21379444) | |
| 7-172, gnl|Mm7|chr18 (21379443-21379608) | |
| 7-172, gnl|monDom2|scaffold_10 (24078065-24078230) | |
| 7-172, gnl|monDom2|scaffold_4 (123974152-123973973) | |
| 7-172, gnl|oryCun1|scaffold_178459 (21198-21020) | |
| 7-172, gnl|oryCun1|scaffold_178459 (21034-21195) | |
| 7-172, gnl|panTro1|chr17 (23853066-23853244) | |
| 7-172, gnl|panTro1|chr4_random (36384460-36384625) | |
| 7-172, gnl|rheMac2|chr18 (25050154-25050332) | |
| 7-172, gnl|rheMac2|chr18 (25050318-25050158) | |
| 7-172, gnl|rn3|chr3 (4859864-4859699) | |
| 7-172, gnl|rn3|chr3 (4859697-4859861) | |
| 344-457, gnl|bosTau2|chr24 (19687187-19687074) | |
| 344-457, gnl|canFam2|chr7 (60507243-60507157) | |
| 344-457, gnl|dasNov1|scaffold_46092 (8827-8738) | |
| 344-457, gnl|echTel1|scaffold_151832 (74-4) | |
| 344-457, gnl|galGal2|chr2 (105546307-105546396) | |
| 344-457, gnl|hg17|chr18 (27958694-27958783) | |
| 344-457, gnl|Hg17|chr18 (27958693-27958806) | |
| 344-457, gnl|loxAfr1|scaffold_48720 (9165-9076) | |
| 344-457, gnl|mm7|chr18 (21391605-21391694) | |
| 344-457, gnl|Mm7|chr18 (21391604-21391717) | |
| 344-457, gnl|monDom2|scaffold_4 (123961045-123960956) | |
| 344-457, gnl|oryCun1|scaffold_178459 (7631-7542) | |
| 344-457, gnl|panTro1|chr17 (23866150-23866239) | |
| 344-457, gnl|rheMac2|chr18 (25063139-25063228) | |
| 344-457, gnl|rn3|chr18 (12808467-12808556) | |
| 560-695, gnl|bosTau2|chr24 (19683818-19683683) | |
| 560-695, gnl|canFam2|chr7 (60503707-60503583) | |
| 560-695, gnl|dasNov1|scaffold_46092 (8609-8499) | |
| 560-695, gnl|echTel1|scaffold_315500 (25856-25980) | |
| 560-695, gnl|galGal2|chr2 (105548706-105548817) | |
| 560-695, gnl|hg17|chr18 (27963066-27963190) | |
| 560-695, gnl|Hg17|chr18 (27963074-27963209) | |
| 560-695, gnl|loxAfr1|scaffold_48720 (5326-5202) | |
| 560-695, gnl|mm7|chr18 (21396788-21396915) | |
| 560-695, gnl|Mm7|chr18 (21396795-21396931) | |
| 560-695, gnl|monDom2|scaffold_4 (123952381-123952260) | |
| 560-695, gnl|oryCun1|scaffold_178459 (2262-2138) | |
| 560-695, gnl|panTro1|chr17 (23870499-23870623) | |
| 560-695, gnl|rheMac2|chr18 (25067457-25067581) | |
| 560-695, gnl|rn3|chr18 (12813135-12813267) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (1.24688) | |
| ldo (0.0970026) |