Non-Coding RNA Search

Ss1.1-rtes29_m1.5

Sequence:


               
               AGGTACGGAAGTCCCCCCAGCAGATGCTCTCCAGAGGTGAAGAGGCATCACCAGATTGCA
GAGCCAAGGCATGCGATCTAGAACTAGTCACGAACAGGAAATTAAGTGCAGATAAAGAAG
TGCTTATGAATGATGAGATTGGGGAGGTGTATAATGAGAACTTCAAAACATGTGCAACAA
TTAAGACTGTGAGAGGCAGGAAGCTGAAAGATCTGAGCACCTTCTCAAATGTTAAGACAG
TCTGTTTGTTGAAGAAAAGTGCTGCCTTGAACATTGTGATTCCTGAGGATTCAGGAGACT
CTGAGTTGGAAGAGGAAGAAGATGAAATGGATGAGGTCGAATGCCTCCTTGAAGAAGTGA
GTCTACAGAGCCCTCTGAAGGCTTCTAAAGGAAGGTCTTACCAGGAGGCTGGAAGGATGC
TCAGGGTGCCACCTGAGAGCGCTGTCCCTACCCAACTTATTGTATGGCCCACCAGAAATA
AGTACAAGTTAAAGCATGGTGAATGTGAATGTGTCCCTGTGTTTTACCAGTTGAAACGAC
AGGACGGCTGTGAAGGCAGTGGTGACAGGCTCCGAAGCAAACACACCATGGCCAGACTGG
AAGGAGTGGCACCCAGGAGGGCCTCCCACAAATGAAACAAATTGCTAAGTTCCAGCTACA
AGAAAGAGCTAAATATTGCATCACCATGATGGATTATAACATGTGTCTTCTTTCTTGATT
CAAACTATTAAAGCTACACTGACAAACAAGAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTACGGAAGTCCCCCCAGCAGATGCTCTCCAGAGGTGAAGAGGCATCACCAGATTGCA
GAGCCAAGGCATGCGATCTAGAACTAGTCACGAACAGGAAATTAAGTGCAGATAAAGAAG
TGCTTATGAATGATGAGATTGGGGAGGTGTATAATGAGAACTTCAAAACATGTGCAACAA
TTAAGACTGTGAGAGGCAGGAAGCTGAAAGATCTGAGCACCTTCTCAAATGTTAAGACAG
TCTGTTTGTTGAAGAAAAGTGCTGCCTTGAACATTGTGATTCCTGAGGATTCAGGAGACT
CTGAGTTGGAAGAGGAAGAAGATGAAATGGATGAGGTCGAATGCCTCCTTGAAGAAGTGA
GTCTACAGAGCCCTCTGAAGGCTTCTAAAGGAAGGTCTTACCAGGAGGCTGGAAGGATGC
TCAGGGTGCCACCTGAGAGCGCTGTCCCTACCCAACTTATTGTATGGCCCACCAGAAATA
AGTACAAGTTAAAGCATGGTGAATGTGAATGTGTCCCTGTGTTTTACCAGTTGAAACGAC
AGGACGGCTGTGAAGGCAGTGGTGACAGGCTCCGAAGCAAACACACCATGGCCAGACTGG
AAGGAGTGGCACCCAGGAGGGCCTCCCACAAATGAAACAAATTGCTAAGTTCCAGCTACA
AGAAAGAGCTAAATATTGCATCACCATGATGGATTATAACATGTGTCTTCTTTCTTGATT
CAAACTATTAAAGCTACACTGACAAACAAGAAAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               194-438, - strand, RNAz p=0.97144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-438, - strand, RNAz p=0.97144

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-630, gnl|bosTau2|chr4 (34589597-34590232)
               

               
               1-630, gnl|Hg17|chrX (141125742-141126349)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-630, gnl|bosTau2|chr4 (34589597-34590232)
               

               
               1-630, gnl|Hg17|chrX (141125742-141126349)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (1.4547)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (1.4547)

	1-630, gnl\|bosTau2\|chr4 (34589597-34590232)
	1-630, gnl\|Hg17\|chrX (141125742-141126349)