Non-Coding RNA Search

Ss1.1-rtes29_m5.5

Sequence:


               
               GCCAAGCTGATGGTGATGAACAGGCTGAGGTCCAGATGTCTGCTCTTCCTGAACAACATA
CTTCTGAGCAGATTGATTACAGAATGTCCAGCCCAACTGAGAAAAGAGCTTCTGAAAAGA
TTGACCCTAAAAAGTCTGCCCCATCTGTACAAAGAGCCTCTCAGCAGAGTGACCACAGAA
TGTCTCTCCCCGCTGACCAAAGAACTTCTCAACAGATTGAAAGTAGACTGTCTGGCCTGG
TTGAGCAAAAAACTTCGGAACAGATTGGCCATATATCGTCTGACCAAGTTAAGCCCAGAA
CATCTGTAAAAATTTACCACAAAGTGCTTGACCAAGCTACTAAACCAGCTGAATACCAGG
CTGCTGACCCTGCCTATCACCTCGCAATTGACGAGGCTGACTACAGTGAATCTGGACAGG
TTGAGGACTTAATGGGTGAAGAGGATGACTACGCAGATGACAACCTGCTTGACTATGGAG
AATATAGCCAGTCTGACGACAGAATATTCAACCAGTTTGGCTACAGCAAGGAAGACCAAG
AGGAAGACTTCCGAGTACAACCTTGCAAATTTGAGCCTAGTGAGAGAGACAGCGATGAAT
CGAAGGCTTCCCTTGAAACTGACACTGAAAGTATAATGGATCTGCGATCATTCATGCCAT
TTGATCAGAGATTGAGCAGAAATTTCTATGTACAAGATCAAGCCTATTCTCGAAGATTTC
CCTCCATCTCATCCAAAGTGGATTATATCATCAGTAAAGAGAAAATTCGACCCATGGACA
TCAGGCCTACTGAAGATATTTCAGAATACCAGGAAAGAAGGAATTCTCAGGAATACAATC
AATTTTATAGGAAGCCATTCCCTCCAATGGTATATGAAGATCCTTATCAAGTTTCACTGC
GCTACATGGAGAAACACCACATTCTGCAGATATTCCAGATCACTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAGCTGATGGTGATGAACAGGCTGAGGTCCAGATGTCTGCTCTTCCTGAACAACATA
CTTCTGAGCAGATTGATTACAGAATGTCCAGCCCAACTGAGAAAAGAGCTTCTGAAAAGA
TTGACCCTAAAAAGTCTGCCCCATCTGTACAAAGAGCCTCTCAGCAGAGTGACCACAGAA
TGTCTCTCCCCGCTGACCAAAGAACTTCTCAACAGATTGAAAGTAGACTGTCTGGCCTGG
TTGAGCAAAAAACTTCGGAACAGATTGGCCATATATCGTCTGACCAAGTTAAGCCCAGAA
CATCTGTAAAAATTTACCACAAAGTGCTTGACCAAGCTACTAAACCAGCTGAATACCAGG
CTGCTGACCCTGCCTATCACCTCGCAATTGACGAGGCTGACTACAGTGAATCTGGACAGG
TTGAGGACTTAATGGGTGAAGAGGATGACTACGCAGATGACAACCTGCTTGACTATGGAG
AATATAGCCAGTCTGACGACAGAATATTCAACCAGTTTGGCTACAGCAAGGAAGACCAAG
AGGAAGACTTCCGAGTACAACCTTGCAAATTTGAGCCTAGTGAGAGAGACAGCGATGAAT
CGAAGGCTTCCCTTGAAACTGACACTGAAAGTATAATGGATCTGCGATCATTCATGCCAT
TTGATCAGAGATTGAGCAGAAATTTCTATGTACAAGATCAAGCCTATTCTCGAAGATTTC
CCTCCATCTCATCCAAAGTGGATTATATCATCAGTAAAGAGAAAATTCGACCCATGGACA
TCAGGCCTACTGAAGATATTTCAGAATACCAGGAAAGAAGGAATTCTCAGGAATACAATC
AATTTTATAGGAAGCCATTCCCTCCAATGGTATATGAAGATCCTTATCAAGTTTCACTGC
GCTACATGGAGAAACACCACATTCTGCAGATATTCCAGATCACTGAAA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-788, gnl|bosTau2|chr11 (2361664-2362421)
               

               
               1-788, gnl|Hg17|chr3 (120348085-120349124)
               

               
               1-788, gnl|Mm7|chr16 (38538548-38537815)
               


               
               792-938, gnl|bosTau2|chr11 (2363244-2363390)
               

               
               792-938, gnl|Hg17|chr3 (120349717-120349860)
               

               
               792-938, gnl|Mm7|chr16 (38537085-38536939)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-788, gnl|bosTau2|chr11 (2361664-2362421)
               

               
               1-788, gnl|Hg17|chr3 (120348085-120349124)
               

               
               1-788, gnl|Mm7|chr16 (38538548-38537815)
               


               
               792-938, gnl|bosTau2|chr11 (2363244-2363390)
               

               
               792-938, gnl|Hg17|chr3 (120349717-120349860)
               

               
               792-938, gnl|Mm7|chr16 (38537085-38536939)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	1-788, gnl\|bosTau2\|chr11 (2361664-2362421)
	1-788, gnl\|Hg17\|chr3 (120348085-120349124)
	1-788, gnl\|Mm7\|chr16 (38538548-38537815)

	792-938, gnl\|bosTau2\|chr11 (2363244-2363390)
	792-938, gnl\|Hg17\|chr3 (120349717-120349860)
	792-938, gnl\|Mm7\|chr16 (38537085-38536939)