Non-Coding RNA Search

Ss1.1-rtes31_a4.5

Sequence:


               
               CTGTCCCAGGAGTTCCTTCTCCTCACCCTGGAGCAGAAGAACATAGCTGTTGAAAATGAC
CTGAGAATAAACAAAGACAGTCTTACTGATCTTTATGTTCAGCATGCAATACCACTGCCT
CAGAGAGATTTGCCAAAGAATAGATGGGGGAAAATGATGGAAAAGAAAAGAGAACAGCAC
GAGATAAGAAATGAGACAAAAAGGAGCAGCAGTGTAGACGGGCTACGGAAAAGACCCCTC
ATTGTGTTTGATGGAAGTTCAACAAGTACAAGCATAAAAGTGAAAAAGACCGAGAACGGA
GATAACGACCGACTCAAGCCCCCGCCTCAGGCGAGCGTCACCAGCAATGCCTTTCGGAAA
TTATCAAATTCCTCTTCAGGTGTTTCACCCCTAAGTTTGTCTTCCAATTTGCCTACGAAC
AATAAAATGGAACCCAGTACTAATGACACTAACCAGAACCATGACTTACTGCATAGGAAA
AGCCCTCCGGGCCCCGTGAAGTCGCCACCTTTGTCGCCTGTTGCAGCTGCTCCCGTGAAG
TTAAAGCGAGCTGCCCCTAAGGAGGAAGCTGAGGCCGCGAATAACCTGAAGCCCCCAGAA
GCGAAGAGGAAGATACAGCATGTTACATGGCCATGAAGGAAGGTTTCCAGAAATGTAAAT
ATTACTGTAATGGTAGTTTTTCAAAGAAATTCACATGTATTGAGAGTATTTACAGAGATC
CTGATTATTGTGGAATTTTCTTAAGAGGTTTAAATTAGGTTCCAAAAAATAAAGTCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCCCAGGAGTTCCTTCTCCTCACCCTGGAGCAGAAGAACATAGCTGTTGAAAATGAC
CTGAGAATAAACAAAGACAGTCTTACTGATCTTTATGTTCAGCATGCAATACCACTGCCT
CAGAGAGATTTGCCAAAGAATAGATGGGGGAAAATGATGGAAAAGAAAAGAGAACAGCAC
GAGATAAGAAATGAGACAAAAAGGAGCAGCAGTGTAGACGGGCTACGGAAAAGACCCCTC
ATTGTGTTTGATGGAAGTTCAACAAGTACAAGCATAAAAGTGAAAAAGACCGAGAACGGA
GATAACGACCGACTCAAGCCCCCGCCTCAGGCGAGCGTCACCAGCAATGCCTTTCGGAAA
TTATCAAATTCCTCTTCAGGTGTTTCACCCCTAAGTTTGTCTTCCAATTTGCCTACGAAC
AATAAAATGGAACCCAGTACTAATGACACTAACCAGAACCATGACTTACTGCATAGGAAA
AGCCCTCCGGGCCCCGTGAAGTCGCCACCTTTGTCGCCTGTTGCAGCTGCTCCCGTGAAG
TTAAAGCGAGCTGCCCCTAAGGAGGAAGCTGAGGCCGCGAATAACCTGAAGCCCCCAGAA
GCGAAGAGGAAGATACAGCATGTTACATGGCCATGAAGGAAGGTTTCCAGAAATGTAAAT
ATTACTGTAATGGTAGTTTTTCAAAGAAATTCACATGTATTGAGAGTATTTACAGAGATC
CTGATTATTGTGGAATTTTCTTAAGAGGTTTAAATTAGGTTCCAAAAAATAAAGTCCTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BVC5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BVC5_HUMAN

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               13-204, gnl|bosTau2|chr11 (6806235-6806426)
               

               
               13-204, gnl|canFam2|chr10 (41209704-41209447)
               

               
               13-204, gnl|galGal2|chr1 (128242648-128242909)
               

               
               13-204, gnl|hg17|chr2 (105414465-105414732)
               

               
               13-204, gnl|Hg17|chr2 (105414534-105414725)
               

               
               13-204, gnl|loxAfr1|scaffold_4291 (33562-33832)
               

               
               13-204, gnl|mm7|chr1 (43341011-43341278)
               

               
               13-204, gnl|Mm7|chr1 (43341078-43341269)
               

               
               13-204, gnl|monDom2|scaffold_11 (24205456-24205677)
               

               
               13-204, gnl|panTro1|chr12 (108378876-108379143)
               

               
               13-204, gnl|rheMac2|chr13 (105228818-105229085)
               

               
               13-204, gnl|rn3|chr9 (42305259-42305523)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-204, gnl|bosTau2|chr11 (6806235-6806426)
               

               
               13-204, gnl|canFam2|chr10 (41209704-41209447)
               

               
               13-204, gnl|galGal2|chr1 (128242648-128242909)
               

               
               13-204, gnl|hg17|chr2 (105414465-105414732)
               

               
               13-204, gnl|Hg17|chr2 (105414534-105414725)
               

               
               13-204, gnl|loxAfr1|scaffold_4291 (33562-33832)
               

               
               13-204, gnl|mm7|chr1 (43341011-43341278)
               

               
               13-204, gnl|Mm7|chr1 (43341078-43341269)
               

               
               13-204, gnl|monDom2|scaffold_11 (24205456-24205677)
               

               
               13-204, gnl|panTro1|chr12 (108378876-108379143)
               

               
               13-204, gnl|rheMac2|chr13 (105228818-105229085)
               

               
               13-204, gnl|rn3|chr9 (42305259-42305523)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tes (0.207814)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	13-204, gnl\|bosTau2\|chr11 (6806235-6806426)
	13-204, gnl\|canFam2\|chr10 (41209704-41209447)
	13-204, gnl\|galGal2\|chr1 (128242648-128242909)
	13-204, gnl\|hg17\|chr2 (105414465-105414732)
	13-204, gnl\|Hg17\|chr2 (105414534-105414725)
	13-204, gnl\|loxAfr1\|scaffold_4291 (33562-33832)
	13-204, gnl\|mm7\|chr1 (43341011-43341278)
	13-204, gnl\|Mm7\|chr1 (43341078-43341269)
	13-204, gnl\|monDom2\|scaffold_11 (24205456-24205677)
	13-204, gnl\|panTro1\|chr12 (108378876-108379143)
	13-204, gnl\|rheMac2\|chr13 (105228818-105229085)
	13-204, gnl\|rn3\|chr9 (42305259-42305523)