Non-Coding RNA Search

Ss1.1-rtes31_g24.5

Sequence:


               
               TTTATCCAGAATAAGGTGGGAATCCATTGGAGGATTTTAAAAAGTGATGTGATTGGTTAC
CCAGAAAGGTTTCAGCAGAAGGAAAGTCTGCTCTTTTGAAAAGCAGGAAAATATTTCAGG
AAAGAGAAACACTAACTCACCTGGTACATGGCTTTAAGAAGTCCAACAGCCATTCTTTCC
TCCCCTTGGCTCTTCACTTGAGAAATGGCACAGCCCTTAGATGAGTGAGATGAAGAAAAG
AACATCAGAAACTAGGCTTTCCTTGCAGCATCCAGAATAAGCAGCATAGAATTTTTTGGC
TTCTTTTTTCCTCTGTTGCACCCTTCCCTCCAATAGAGAAAGCTTAATAGAGACCTAGGA
ATCTAATGGCATACAATTTAACCTGTGCCTAAATCACTTCCTAATTTATTATTTTAACAA
CAGATTTTCTAGATTTTGCAAATAAAGACTGACTCCAAGCAATGTAACTATTTGCATAAA
GACACACAGCTAATAAATAACAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATCCAGAATAAGGTGGGAATCCATTGGAGGATTTTAAAAAGTGATGTGATTGGTTAC
CCAGAAAGGTTTCAGCAGAAGGAAAGTCTGCTCTTTTGAAAAGCAGGAAAATATTTCAGG
AAAGAGAAACACTAACTCACCTGGTACATGGCTTTAAGAAGTCCAACAGCCATTCTTTCC
TCCCCTTGGCTCTTCACTTGAGAAATGGCACAGCCCTTAGATGAGTGAGATGAAGAAAAG
AACATCAGAAACTAGGCTTTCCTTGCAGCATCCAGAATAAGCAGCATAGAATTTTTTGGC
TTCTTTTTTCCTCTGTTGCACCCTTCCCTCCAATAGAGAAAGCTTAATAGAGACCTAGGA
ATCTAATGGCATACAATTTAACCTGTGCCTAAATCACTTCCTAATTTATTATTTTAACAA
CAGATTTTCTAGATTTTGCAAATAAAGACTGACTCCAAGCAATGTAACTATTTGCATAAA
GACACACAGCTAATAAATAACAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               80-188, - strand, RNAz p=0.714931

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-188, - strand, RNAz p=0.714931

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-504, gnl|bosTau2|chr18 (44415615-44416116)
               

               
               1-504, gnl|Hg17|chr19 (42653278-42652770)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr18 (44415615-44416116)
               

               
               1-504, gnl|Hg17|chr19 (42653278-42652770)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mgp (0.230681)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (0.230681)
               

               
               tes (0.207814)

	1-504, gnl\|bosTau2\|chr18 (44415615-44416116)
	1-504, gnl\|Hg17\|chr19 (42653278-42652770)