Ss1.1-rtes31_i24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGAACAGCAGCACAAAAAAATGATTACTTAACTGAATGGAACAAGAAGGTTCATATTTT CAAGGATACGTTTTTATTCTTAGAGTAGAAGTTTTCCTCAAGATGACAAGTGCTTCAAAC TCTCCAGGATCTTACTTATCCTCAAAAACAAGAAATTCTAAAATAGATGACACCTACCTG AAGGAATTGAATGAGGACTTAAAGCTAAGGAAGCAGGAACTTCTAGAGATATTAAAACCT CTAGAAGATAAGAACAGTCTATTATTCCAGAAGCTGATGTCTAACTTGGAGGAAAAACAA AGAAGTCTGCAGATCATGAGGCGGATCATGGCAGGGAAGGGGAATGATGACTCCGCAGTC ATCAAGCTCATTAAGGAAGCAGAAGAGATGAAGCAGAATCTGACATTCAACACAGAAGAA CTCGGCGATCAACCCAAAGCACCACAGATAAAGAACAAAGCAGACTTGCAGGATGGAAAG GCTTCCAAAACCCCCTCAACATCTAGGAAGACCAAGAATGAACTGGAGACCTTGTATACA GAGAAAGTGAAGGAAATAAAGAAGAGGCTCTTTCTTCCACCAGGAAAAGCAGCAGAAGAA AATGGAATGGGTCAGATATCAGGAACAACCCAACATCATTCAGAATGATTTCAATGGAAA AGTGATTGTGCTGAGAATTGAAGCCTTGAAGAACTACCAGAAGGCCAATGATCTGAAGTT ATCACTGTATATACAGCAGAATTTTGAGCCAAAGCAAGCATTTTTGGATCTTCCTGAGTC CCAAGGTACTACGGGCACTACAACCATAGGCAGAGAAACTCCTGGCAAAAATGAACCTAA TGTGAGAATTCTGAGATCAAAGAACTACACAGAACAACAAGGAGCTAAAGGAAGTCAGTT TGATGATGGAAGAGGGAGGCTCTTTTTTCTAAGGTCAATGCCAGATGAAGTGCTGAAGGA TTTGTAGGCTTTCACTCCATTTGCTTTGGACAGATTTAAAGACTAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGAACAGCAGCACAAAAAAATGATTACTTAACTGAATGGAACAAGAAGGTTCATATTTT CAAGGATACGTTTTTATTCTTAGAGTAGAAGTTTTCCTCAAGATGACAAGTGCTTCAAAC TCTCCAGGATCTTACTTATCCTCAAAAACAAGAAATTCTAAAATAGATGACACCTACCTG AAGGAATTGAATGAGGACTTAAAGCTAAGGAAGCAGGAACTTCTAGAGATATTAAAACCT CTAGAAGATAAGAACAGTCTATTATTCCAGAAGCTGATGTCTAACTTGGAGGAAAAACAA AGAAGTCTGCAGATCATGAGGCGGATCATGGCAGGGAAGGGGAATGATGACTCCGCAGTC ATCAAGCTCATTAAGGAAGCAGAAGAGATGAAGCAGAATCTGACATTCAACACAGAAGAA CTCGGCGATCAACCCAAAGCACCACAGATAAAGAACAAAGCAGACTTGCAGGATGGAAAG GCTTCCAAAACCCCCTCAACATCTAGGAAGACCAAGAATGAACTGGAGACCTTGTATACA GAGAAAGTGAAGGAAATAAAGAAGAGGCTCTTTCTTCCACCAGGAAAAGCAGCAGAAGAA AATGGAATGGGTCAGATATCAGGAACAACCCAACATCATTCAGAATGATTTCAATGGAAA AGTGATTGTGCTGAGAATTGAAGCCTTGAAGAACTACCAGAAGGCCAATGATCTGAAGTT ATCACTGTATATACAGCAGAATTTTGAGCCAAAGCAAGCATTTTTGGATCTTCCTGAGTC CCAAGGTACTACGGGCACTACAACCATAGGCAGAGAAACTCCTGGCAAAAATGAACCTAA TGTGAGAATTCTGAGATCAAAGAACTACACAGAACAACAAGGAGCTAAAGGAAGTCAGTT TGATGATGGAAGAGGGAGGCTCTTTTTTCTAAGGTCAATGCCAGATGAAGTGCTGAAGGA TTTGTAGGCTTTCACTCCATTTGCTTTGGACAGATTTAAAGACTAGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 151-305, + strand, RNAz p=0.802218 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 151-305, + strand, RNAz p=0.802218 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 151-305, gnl|bosTau2|chr10 (53025899-53025745) | |
| 151-305, gnl|canFam2|chr8 (43594097-43594654) | |
| 151-305, gnl|dasNov1|scaffold_22676 (39186-38638) | |
| 151-305, gnl|echTel1|scaffold_273252 (5783-6351) | |
| 151-305, gnl|hg17|chr14 (66022728-66023279) | |
| 151-305, gnl|Hg17|chr14 (66023126-66023280) | |
| 151-305, gnl|mm7|chr12 (76155603-76156145) | |
| 151-305, gnl|Mm7|chr12 (76155992-76156146) | |
| 151-305, gnl|monDom2|scaffold_8 (81452346-81452913) | |
| 151-305, gnl|panTro1|chr15 (65633277-65633826) | |
| 151-305, gnl|rheMac2|chr7 (129528699-129529250) | |
| 151-305, gnl|rn3|chr6 (100797590-100798137) | |
| 642-788, gnl|bosTau2|chr10 (53020123-53019977) | |
| 642-788, gnl|canFam2|chr8 (43600338-43600541) | |
| 642-788, gnl|dasNov1|scaffold_22676 (31697-31490) | |
| 642-788, gnl|hg17|chr14 (66028509-66028715) | |
| 642-788, gnl|Hg17|chr14 (66028522-66028668) | |
| 642-788, gnl|loxAfr1|scaffold_1647 (98609-98402) | |
| 642-788, gnl|mm7|chr12 (76160896-76161102) | |
| 642-788, gnl|Mm7|chr12 (76160909-76161055) | |
| 642-788, gnl|monDom2|scaffold_8 (81458209-81458413) | |
| 642-788, gnl|oryCun1|scaffold_83090 (4021-4227) | |
| 642-788, gnl|panTro1|chr15 (65639054-65639260) | |
| 642-788, gnl|rheMac2|chr7 (129534464-129534669) | |
| 642-788, gnl|rn3|chr6 (100802721-100802927) | |
| 844-1007, gnl|bosTau2|chr10 (53013144-53012981) | |
| 844-1007, gnl|canFam2|chr8 (43606677-43606916) | |
| 844-1007, gnl|echTel1|scaffold_184477 (6183-6415) | |
| 844-1007, gnl|hg17|chr14 (66034810-66035042) | |
| 844-1007, gnl|Hg17|chr14 (66034823-66034986) | |
| 844-1007, gnl|loxAfr1|scaffold_1647 (92175-91946) | |
| 844-1007, gnl|mm7|chr12 (76167478-76167716) | |
| 844-1007, gnl|Mm7|chr12 (76167494-76167661) | |
| 844-1007, gnl|monDom2|scaffold_8 (81468865-81469085) | |
| 844-1007, gnl|oryCun1|scaffold_178671 (58744-58976) | |
| 844-1007, gnl|panTro1|chr15 (65645399-65645631) | |
| 844-1007, gnl|rheMac2|chr7 (129540745-129540978) | |
| 844-1007, gnl|rn3|chr6 (100812830-100813056) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 151-305, gnl|bosTau2|chr10 (53025899-53025745) | |
| 151-305, gnl|canFam2|chr8 (43594097-43594654) | |
| 151-305, gnl|dasNov1|scaffold_22676 (39186-38638) | |
| 151-305, gnl|echTel1|scaffold_273252 (5783-6351) | |
| 151-305, gnl|hg17|chr14 (66022728-66023279) | |
| 151-305, gnl|Hg17|chr14 (66023126-66023280) | |
| 151-305, gnl|mm7|chr12 (76155603-76156145) | |
| 151-305, gnl|Mm7|chr12 (76155992-76156146) | |
| 151-305, gnl|monDom2|scaffold_8 (81452346-81452913) | |
| 151-305, gnl|panTro1|chr15 (65633277-65633826) | |
| 151-305, gnl|rheMac2|chr7 (129528699-129529250) | |
| 151-305, gnl|rn3|chr6 (100797590-100798137) | |
| 642-788, gnl|bosTau2|chr10 (53020123-53019977) | |
| 642-788, gnl|canFam2|chr8 (43600338-43600541) | |
| 642-788, gnl|dasNov1|scaffold_22676 (31697-31490) | |
| 642-788, gnl|hg17|chr14 (66028509-66028715) | |
| 642-788, gnl|Hg17|chr14 (66028522-66028668) | |
| 642-788, gnl|loxAfr1|scaffold_1647 (98609-98402) | |
| 642-788, gnl|mm7|chr12 (76160896-76161102) | |
| 642-788, gnl|Mm7|chr12 (76160909-76161055) | |
| 642-788, gnl|monDom2|scaffold_8 (81458209-81458413) | |
| 642-788, gnl|oryCun1|scaffold_83090 (4021-4227) | |
| 642-788, gnl|panTro1|chr15 (65639054-65639260) | |
| 642-788, gnl|rheMac2|chr7 (129534464-129534669) | |
| 642-788, gnl|rn3|chr6 (100802721-100802927) | |
| 844-1007, gnl|bosTau2|chr10 (53013144-53012981) | |
| 844-1007, gnl|canFam2|chr8 (43606677-43606916) | |
| 844-1007, gnl|echTel1|scaffold_184477 (6183-6415) | |
| 844-1007, gnl|hg17|chr14 (66034810-66035042) | |
| 844-1007, gnl|Hg17|chr14 (66034823-66034986) | |
| 844-1007, gnl|loxAfr1|scaffold_1647 (92175-91946) | |
| 844-1007, gnl|mm7|chr12 (76167478-76167716) | |
| 844-1007, gnl|Mm7|chr12 (76167494-76167661) | |
| 844-1007, gnl|monDom2|scaffold_8 (81468865-81469085) | |
| 844-1007, gnl|oryCun1|scaffold_178671 (58744-58976) | |
| 844-1007, gnl|panTro1|chr15 (65645399-65645631) | |
| 844-1007, gnl|rheMac2|chr7 (129540745-129540978) | |
| 844-1007, gnl|rn3|chr6 (100812830-100813056) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| cte (0.29274) |